Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 3.8e-99 364.8 175 100.0
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 1.7e-62 243.0 117 98.3
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 2.3e-43 179.5 184 54.9
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 9.2e-29 131.0 126 58.7
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 2.0e-23 113.2 66 83.3
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 4.3e-18 95.5 63 77.8
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 1.1e-16 90.9 49 87.8
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 1.8e-16 90.1 105 49.5
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 3.1e-16 89.4 49 85.7
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.2e-16 88.6 49 83.7
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.2e-16 88.6 49 83.7
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 6.8e-16 88.2 49 83.7
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 6.8e-16 88.2 49 83.7
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 8.9e-16 87.8 63 66.7
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 8.9e-16 87.8 49 83.7
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.2e-15 87.4 49 83.7
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.5e-15 87.0 49 83.7
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.5e-15 87.0 49 83.7
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 1.5e-15 87.0 49 81.6
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.5e-15 87.0 49 83.7
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 1.5e-15 87.0 49 83.7
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 81.6
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 2.0e-15 86.7 49 83.7
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 2.6e-15 86.3 49 81.6
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 2.6e-15 86.3 49 81.6
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 2.6e-15 86.3 49 81.6
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 81.6
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 3.4e-15 85.9 49 79.6
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 4.4e-15 85.5 63 65.1
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 4.4e-15 85.5 113 43.4
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 4.4e-15 85.5 49 81.6
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 5.8e-15 85.1 49 79.6
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 5.8e-15 85.1 49 79.6
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 5.8e-15 85.1 49 79.6
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 5.8e-15 85.1 49 81.6
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 5.8e-15 85.1 57 73.7
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 79.6
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 79.6
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 7.6e-15 84.7 49 81.6
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 9.9e-15 84.3 49 81.6
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 1.3e-14 84.0 49 77.6
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 1.7e-14 83.6 49 79.6
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 2.2e-14 83.2 55 74.5
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 2.2e-14 83.2 49 79.6
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 2.2e-14 83.2 49 79.6
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.2e-14 83.2 49 77.6
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.7e-14 82.4 49 77.6
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 4.9e-14 82.0 49 77.6
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 4.9e-14 82.0 49 77.6
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 8.4e-14 81.3 49 77.6
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.1e-13 80.9 49 77.6
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.1e-13 80.9 49 77.6
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.1e-13 80.9 49 75.5
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.1e-13 80.9 49 77.6
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-13 80.5 49 75.5
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-13 80.5 49 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 2.4e-13 79.7 49 75.5
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 2.4e-13 79.7 49 75.5
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.4e-13 79.7 49 75.5
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 4.1e-13 79.0 49 77.6
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 5.4e-13 78.6 49 75.5
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 7.1e-13 78.2 49 75.5
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.7e-12 76.3 49 75.5
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 2.7e-12 76.3 49 71.4
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 3.5e-12 75.9 49 73.5
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 3.5e-12 75.9 49 73.5
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.0e-12 75.1 49 71.4
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 7.8e-12 74.7 49 67.3
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.0e-11 74.3 49 71.4
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.3e-11 73.9 49 73.5
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.7e-11 73.6 65 58.5
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.7e-11 73.6 49 71.4
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.7e-11 73.6 49 71.4
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.7e-11 73.6 49 71.4
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 2.3e-11 73.2 45 82.2
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 8.6e-11 71.2 49 63.3
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 1.1e-10 70.9 49 73.5
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.1e-10 70.9 49 69.4
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.5e-10 69.7 42 83.3
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 4.3e-10 68.9 49 65.3
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 7.3e-10 68.2 49 69.4
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 9.6e-10 67.8 49 63.3
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 9.6e-10 67.8 42 76.2
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 2.8e-09 66.2 49 65.3
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 8.1e-09 64.7 49 61.2
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 8.1e-09 64.7 49 59.2
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.1e-08 62.8 49 67.3
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.0e-08 62.4 43 67.4
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 1.5e-07 60.5 36 75.0
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 2.9e-06 56.2 36 72.2


User provided reference genes

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