Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.8e-211 738.4 393 100.0
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 4.6e-169 598.2 390 75.1
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 2.8e-166 589.0 390 73.3
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.0e-164 582.8 414 70.5
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 7.5e-164 580.9 390 73.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 4.9e-163 578.2 391 72.4
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 1.2e-161 573.5 390 73.1
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 2.7e-161 572.4 390 71.5
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 2.7e-161 572.4 390 72.8
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 3.5e-161 572.0 390 70.8
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 6.0e-161 571.2 390 71.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.3e-160 570.1 390 74.9
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 2.3e-160 569.3 390 70.3
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 3.9e-160 568.5 390 72.8
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 1.1e-159 567.0 390 72.6
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 4.3e-159 565.1 390 69.7
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 5.6e-159 564.7 392 75.8
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 9.5e-159 563.9 390 76.2
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.6e-158 563.1 391 71.6
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 2.8e-158 562.4 393 69.7
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 4.7e-158 561.6 391 74.2
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 8.1e-158 560.8 394 70.1
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 1.1e-157 560.5 391 70.1
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.5e-156 556.6 391 69.8
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 2.6e-156 555.8 390 69.2
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 3.4e-156 555.4 390 69.5
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 7.6e-156 554.3 390 71.0
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 7.6e-156 554.3 467 61.0
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.2e-155 552.7 390 70.8
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.4e-154 550.1 391 69.1
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 3.2e-154 548.9 391 69.3
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.1e-153 546.2 391 68.8
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 3.5e-153 545.4 403 72.5
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 4.6e-153 545.0 391 67.5
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.0e-152 543.9 389 68.1
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 1.3e-152 543.5 388 69.3
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.7e-152 543.1 391 68.5
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 3.0e-152 542.3 391 72.6
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 6.6e-152 541.2 390 72.1
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 6.6e-152 541.2 390 66.9
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 1.1e-151 540.4 390 68.2
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.1e-151 540.4 392 67.9
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 2.5e-151 539.3 391 67.0
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 4.3e-151 538.5 389 67.6
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 4.3e-151 538.5 392 67.6
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 3.6e-150 535.4 390 66.9
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.2e-150 534.6 391 66.2
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 6.2e-150 534.6 391 67.3
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.4e-149 532.7 391 66.0
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.5e-148 530.0 438 65.5
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 7.6e-148 527.7 394 65.0
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.4e-146 522.7 382 66.5
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.2e-145 520.4 392 69.9
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 6.0e-145 518.1 393 65.4
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.8e-145 517.7 391 65.2
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.7e-144 516.5 363 69.4
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 3.3e-143 512.3 374 67.1
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.8e-142 509.2 391 67.0
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 4.8e-142 508.4 391 65.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 8.1e-142 507.7 396 64.1
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 3.1e-141 505.8 390 69.7
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.0e-141 505.4 395 63.5
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 9.0e-141 504.2 390 63.1
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 4.5e-140 501.9 394 66.2
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 7.6e-140 501.1 400 67.5
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 2.2e-139 499.6 351 68.7
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 4.9e-139 498.4 391 62.7
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 4.9e-139 498.4 391 62.7
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 8.4e-139 497.7 391 62.9
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 1.9e-138 496.5 391 62.7
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 4.2e-138 495.4 391 62.4
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 7.1e-138 494.6 363 71.9
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 7.9e-137 491.1 389 59.6
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 5.1e-136 488.4 395 66.6
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 7.4e-135 484.6 391 61.6
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 3.6e-134 482.3 395 67.1
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 1.1e-133 480.7 388 63.7
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 3.1e-133 479.2 389 63.5
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 6.9e-133 478.0 387 65.4
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 4.5e-132 475.3 301 76.1
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 4.9e-131 471.9 387 65.6
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 8.4e-131 471.1 336 73.8
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 1.1e-130 470.7 394 65.5
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 4.2e-130 468.8 394 64.7
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 4.2e-130 468.8 387 65.1
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 9.3e-130 467.6 390 60.5
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 7.4e-127 458.0 323 68.1
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.2e-124 450.7 391 60.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 4.5e-124 448.7 378 59.5
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.3e-123 447.2 391 57.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 9.3e-122 441.0 320 66.6
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 2.3e-120 436.4 367 63.5
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 3.9e-120 435.6 391 59.6
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 6.7e-120 434.9 391 58.1
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 4.5e-116 422.2 390 56.7
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 3.8e-115 419.1 343 67.3
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 4.2e-114 415.6 391 54.7
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 3.6e-113 412.5 287 76.0
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.1e-109 399.4 345 62.0
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 5.3e-109 398.7 473 48.2
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 8.8e-104 381.3 261 77.0
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.0e-103 380.2 301 62.5
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 4.4e-103 379.0 281 66.5
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 5.7e-103 378.6 268 67.9
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 1.5e-100 370.5 259 74.9
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 1.0e-99 367.9 308 66.2
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 2.5e-98 363.2 311 65.6
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.6e-97 360.5 310 64.8
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 2.9e-91 339.7 323 53.6
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.6e-84 317.4 299 56.9
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 3.4e-79 299.7 405 44.0
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.2e-76 291.2 258 65.5
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 9.5e-74 281.6 211 65.4
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 5.6e-66 255.8 298 46.3
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 3.4e-63 246.5 187 67.4
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 4.6e-60 236.1 256 51.6
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 5.0e-59 232.6 327 44.3
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 3.6e-57 226.5 309 46.0
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 2.6e-55 220.3 207 50.2
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 2.0e-52 210.7 158 66.5
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 2.4e-45 187.2 143 66.4
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 6.0e-44 182.6 155 58.1
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 3.0e-43 180.3 151 59.6
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 1.9e-42 177.6 172 54.1
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.0e-40 169.9 124 66.1
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 9.2e-37 158.7 300 35.7
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 5.8e-31 139.4 81 79.0
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.7e-30 137.9 81 77.8
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 8.7e-27 125.6 157 46.5
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 1.3e-25 121.7 89 67.4
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 1.1e-24 118.6 287 28.9
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.4e-22 109.4 67 77.6
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 4.2e-21 106.7 78 61.5
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 4.2e-21 106.7 78 61.5
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 5.4e-21 106.3 78 61.5
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 9.6e-18 95.5 290 27.2
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 9.0e-16 89.0 58 63.8
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 2.1e-09 67.8 131 35.9
Os08g0103400 Oryza sativa ssp. japonica HOM05D000571 ORTHO05D000435 2.2e-06 57.8 232 29.3
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 6.5e-06 56.2 42 52.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 8.4e-06 55.8 42 54.8
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 8.4e-06 55.8 42 54.8


User provided reference genes

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