Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 2.9e-73 278.5 140 100.0
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 3.1e-43 178.7 95 91.6
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 4.0e-43 178.3 95 90.5
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.0e-42 176.0 95 90.5
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 7.6e-42 174.1 95 87.4
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 1.3e-41 173.3 95 87.4
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.3e-41 173.3 94 89.4
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 1.7e-41 172.9 95 88.4
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 2.2e-41 172.6 95 87.4
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 2.9e-41 172.2 100 82.0
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 3.8e-41 171.8 95 85.3
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 4.9e-41 171.4 95 86.3
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 4.9e-41 171.4 95 86.3
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 8.4e-41 170.6 95 86.3
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.4e-40 169.9 95 84.2
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 1.4e-40 169.9 95 88.4
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 1.9e-40 169.5 95 85.3
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 2.4e-40 169.1 95 83.2
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 2.4e-40 169.1 95 84.2
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 3.2e-40 168.7 95 85.3
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 3.2e-40 168.7 95 87.4
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.2e-40 168.7 95 83.2
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 3.2e-40 168.7 95 84.2
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 3.2e-40 168.7 95 85.3
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 4.2e-40 168.3 95 83.2
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 4.2e-40 168.3 95 85.3
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 4.2e-40 168.3 95 85.3
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 5.4e-40 167.9 95 86.3
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 9.3e-40 167.2 95 81.1
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 1.2e-39 166.8 95 82.1
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 1.2e-39 166.8 95 84.2
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 2.1e-39 166.0 95 83.2
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 2.7e-39 165.6 95 84.2
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 3.5e-39 165.2 95 83.2
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 6.0e-39 164.5 95 83.2
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 6.0e-39 164.5 95 80.0
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 6.0e-39 164.5 95 80.0
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 6.0e-39 164.5 95 84.2
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 7.8e-39 164.1 95 80.0
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 1.0e-38 163.7 95 81.1
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 1.3e-38 163.3 95 81.1
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 1.3e-38 163.3 95 81.1
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 1.3e-38 163.3 95 82.1
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 1.7e-38 162.9 95 82.1
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 3.0e-38 162.2 95 80.0
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 3.0e-38 162.2 88 87.5
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 3.0e-38 162.2 91 84.6
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.9e-38 161.8 95 81.1
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 3.9e-38 161.8 95 81.1
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 3.9e-38 161.8 95 77.9
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 6.6e-38 161.0 95 77.9
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 1.1e-37 160.2 95 82.1
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 1.1e-37 160.2 95 81.1
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 1.5e-37 159.8 95 80.0
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 2.5e-37 159.1 95 82.1
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 2.5e-37 159.1 95 80.0
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 2.5e-37 159.1 95 78.9
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 4.3e-37 158.3 95 78.9
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 5.6e-37 157.9 95 78.9
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 7.3e-37 157.5 95 77.9
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 7.3e-37 157.5 95 78.9
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 1.3e-36 156.8 114 71.1
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 2.1e-36 156.0 96 77.1
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 4.8e-36 154.8 95 77.9
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 4.8e-36 154.8 94 76.6
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 1.4e-35 153.3 95 74.7
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.8e-35 152.9 95 74.7
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 3.1e-35 152.1 95 74.7
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 6.9e-35 151.0 97 76.3
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 1.2e-34 150.2 93 75.3
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 1.5e-34 149.8 95 75.8
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 2.0e-34 149.4 95 72.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 3.4e-34 148.7 93 78.5
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 4.5e-34 148.3 93 74.2
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 5.8e-34 147.9 95 72.6
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 5.8e-34 147.9 105 68.6
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 9.9e-34 147.1 111 67.6
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 9.9e-34 147.1 111 67.6
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 1.7e-33 146.4 95 70.5
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 2.2e-33 146.0 93 71.0
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 2.2e-33 146.0 93 71.0
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 2.9e-33 145.6 95 69.5
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 2.9e-33 145.6 95 69.5
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 6.4e-33 144.4 95 71.6
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 6.4e-33 144.4 95 72.6
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 8.4e-33 144.1 95 74.7
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 1.1e-32 143.7 95 69.5
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 1.9e-32 142.9 95 66.3
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 4.2e-32 141.7 95 67.4
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 1.2e-31 140.2 95 67.4
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 1.2e-31 140.2 95 68.4
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 1.2e-31 140.2 95 68.4
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 2.1e-31 139.4 95 73.7
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 1.0e-30 137.1 95 68.4
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 1.9e-29 132.9 102 64.7
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 1.9e-29 132.9 105 62.9
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 1.9e-29 132.9 105 62.9
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 3.3e-29 132.1 95 67.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 9.6e-29 130.6 103 63.1
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 5.3e-27 124.8 99 59.6
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 6.4e-25 117.9 104 62.5
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 4.2e-24 115.2 66 78.8
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 3.9e-22 108.6 64 78.1
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 9.0e-19 97.4 109 45.0
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 7.6e-18 94.4 82 58.5
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 1.0e-17 94.0 106 48.1
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 2.9e-17 92.4 120 44.2
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 3.5e-15 85.5 50 78.0
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.3e-14 83.6 98 38.8
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 5.1e-14 81.6 95 44.2
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 5.0e-09 65.1 100 38.0
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 8.5e-09 64.3 40 67.5
Dinv22904 Davidia involucrata HOM05D006710 ORTHO05D008353 1.6e-07 60.1 62 50.0
HPP92_013649 Vanilla planifolia HOM05D006710 ORTHO05D008353 2.3e-06 56.2 35 71.4


User provided reference genes

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