Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.6e-149 532.7 263 100.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 5.2e-76 288.5 258 58.9
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 2.0e-75 286.6 259 58.7
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.6e-75 286.2 255 60.8
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 5.7e-75 285.0 259 58.3
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.1e-70 270.8 241 58.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.9e-70 270.0 255 58.4
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 2.1e-69 266.5 180 70.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 3.6e-69 265.8 254 57.9
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 3.6e-69 265.8 251 58.2
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 8.0e-69 264.6 221 62.9
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.0e-68 264.2 253 58.5
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 4.0e-68 262.3 255 56.9
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 5.7e-67 258.5 260 53.5
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 3.7e-66 255.8 175 73.1
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 8.3e-66 254.6 288 51.7
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.1e-65 254.2 255 56.9
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.1e-65 252.7 260 56.2
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 4.1e-65 252.3 255 55.3
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 3.5e-64 249.2 254 54.3
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 3.5e-64 249.2 212 59.9
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 3.5e-64 249.2 254 54.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.9e-64 248.4 158 75.9
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.3e-63 247.3 156 76.3
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.7e-63 246.9 177 70.6
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.7e-63 246.9 262 53.8
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.7e-63 246.9 255 54.1
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.3e-63 246.5 190 65.8
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.8e-63 245.7 255 54.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 8.6e-63 244.6 256 53.5
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.9e-62 243.4 237 57.0
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 3.3e-62 242.7 255 52.5
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 3.3e-62 242.7 197 63.5
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 5.6e-62 241.9 267 51.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 5.6e-62 241.9 257 52.5
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.3e-62 241.5 252 54.8
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 9.5e-62 241.1 258 53.5
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 2.1e-61 240.0 297 48.1
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 2.1e-61 240.0 174 67.2
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.1e-61 240.0 251 54.2
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.1e-61 240.0 190 64.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 6.1e-61 238.4 254 54.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 8.0e-61 238.0 189 64.0
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.0e-60 237.7 152 73.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.2e-60 235.3 253 54.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.2e-60 235.3 251 54.2
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 6.8e-60 235.0 156 73.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 6.8e-60 235.0 151 75.5
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-59 234.2 176 66.5
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 4.4e-59 232.3 263 52.5
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.4e-59 232.3 251 56.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.7e-59 231.9 189 65.6
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 7.5e-59 231.5 189 65.1
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 9.8e-59 231.1 189 64.6
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.7e-58 230.3 174 66.1
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.8e-57 226.9 257 50.2
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.4e-57 226.5 259 55.2
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 4.1e-57 225.7 245 51.8
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 4.1e-57 225.7 175 66.9
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 7.0e-57 224.9 257 51.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.6e-56 223.8 219 57.5
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 4.6e-56 222.2 158 70.9
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 7.8e-56 221.5 168 64.3
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.0e-55 221.1 168 64.9
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 2.3e-55 219.9 168 63.7
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 3.0e-55 219.5 174 62.1
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 8.6e-55 218.0 170 62.9
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 8.6e-55 218.0 145 72.4
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-54 217.6 168 63.1
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-54 217.6 167 63.5
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.5e-54 217.2 168 63.7
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.9e-54 216.9 168 63.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 9.5e-54 214.5 168 61.9
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 3.6e-53 212.6 257 47.5
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.7e-53 212.2 129 75.2
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 8.0e-53 211.5 259 47.9
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 1.1e-52 211.1 168 63.1
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 6.8e-52 208.4 168 62.5
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 6.8e-52 208.4 282 46.5
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 6.8e-52 208.4 168 63.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 8.9e-52 208.0 170 61.2
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.2e-51 207.6 254 49.2
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 2.0e-51 206.8 173 61.8
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 3.4e-51 206.1 168 61.3
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.4e-49 199.9 137 67.2
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.5e-48 196.1 159 57.2
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.3e-46 189.5 261 44.8
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.4e-44 184.1 108 81.5
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.1e-44 183.0 134 64.9
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 5.2e-44 182.2 252 46.4
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 1.2e-43 181.0 256 44.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 5.8e-43 178.7 217 47.9
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.4e-41 174.1 255 45.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.9e-41 173.7 154 55.2
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.2e-40 171.0 134 61.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.5e-40 169.5 189 49.2
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 8.6e-39 164.9 326 37.4
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 2.8e-37 159.8 175 50.9
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 2.2e-34 150.2 100 70.0
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.6e-32 144.1 166 48.2
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.1e-30 137.9 137 50.4
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.1e-29 133.7 136 48.5
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 5.2e-28 129.0 145 48.3
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 5.2e-28 129.0 132 51.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.7e-23 114.0 132 48.5
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 9.3e-17 91.7 225 35.6
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.3e-15 87.8 109 43.1
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.7e-13 79.7 63 65.1
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.3e-10 71.2 49 67.3
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.3e-10 71.2 93 47.3
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.4e-09 67.0 50 66.0
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-08 64.7 49 61.2
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.7e-08 63.5 124 32.3
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 3.3e-06 56.6 44 59.1
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 3.3e-06 56.6 44 59.1
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 3.3e-06 56.6 66 45.5
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 7.4e-06 55.5 55 50.9
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 7.4e-06 55.5 55 50.9


User provided reference genes

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