Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 2323.9 1199 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1840.9 1207 78.6
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1771.5 1207 74.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1757.3 1206 74.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1756.1 1202 74.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1755.7 1200 74.3
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1750.7 1208 74.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1747.6 1209 74.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1735.3 1204 73.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1732.6 1202 73.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1730.7 1201 72.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1725.3 1211 74.0
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1719.5 1211 73.1
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1709.9 1211 72.0
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1706.8 1182 74.1
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1706.0 1205 72.4
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1705.3 1203 72.3
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1703.0 1203 72.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1701.4 1199 72.1
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1700.6 1209 72.9
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1698.3 1210 71.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1697.9 1202 71.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1692.2 1205 71.1
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1684.8 1171 73.7
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1679.1 1206 71.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1675.2 1206 72.4
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1671.0 1202 71.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1214 71.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1662.5 1208 70.9
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1654.4 1207 70.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1654.0 1207 70.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1653.3 1210 70.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1649.0 1200 70.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1647.9 1200 69.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 1200 70.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1645.9 1179 71.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1642.9 1200 70.3
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1642.5 1200 70.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1641.3 1200 70.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1639.8 1204 68.4
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1637.5 1209 70.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1201 68.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1633.2 1208 68.4
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1632.5 1198 69.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1630.5 1212 69.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1210 69.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1203 69.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1621.7 1200 68.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1617.4 1199 69.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1615.9 1218 68.5
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1613.2 1206 69.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1607.0 1203 67.9
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1606.3 1215 67.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1604.0 1203 67.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1602.4 1205 67.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1259 66.7
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1165 70.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1207 67.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1204 66.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1577.0 1209 66.3
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1575.5 1207 68.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1206 67.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1201 66.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1206 66.9
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1555.0 1206 65.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1553.5 1169 68.7
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1553.5 1209 66.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1551.6 1199 66.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1549.6 1203 66.9
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1548.9 1204 65.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1548.5 1200 66.9
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1546.9 1205 66.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1546.6 1204 65.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1545.0 1207 66.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1545.0 1203 65.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1205 66.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1532.7 1199 65.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1528.8 1210 65.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1527.7 1207 66.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1190 64.8
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1506.9 1120 68.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1506.9 1207 67.0
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1506.1 1207 65.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1505.7 1200 64.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1502.3 1172 65.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1501.5 1190 64.6
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1489.9 1179 64.3
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1190 64.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1477.6 985 76.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1459.5 1206 63.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1454.1 1291 61.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1451.0 1135 65.4
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1431.0 1208 61.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1375.1 1025 68.1
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1371.3 1199 59.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1366.7 1216 58.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1354.3 1180 59.3
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1346.3 1202 58.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1339.3 1137 61.4
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1338.2 1208 59.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1239.6 1041 62.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1194.9 818 74.2
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1148.7 962 63.7
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1115.5 888 64.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1110.9 837 69.8
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 6.2e-302 1041.2 1146 52.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.9e-266 923.3 1247 42.6
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-266 923.3 645 73.2
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.5e-266 922.9 1243 43.0
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.2e-266 922.2 1254 43.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.1e-241 840.1 1156 43.0
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.2e-240 835.5 1207 40.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-239 834.3 1140 43.9
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 8.0e-233 811.6 1155 42.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.8e-230 803.1 1155 41.7
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.7e-222 776.2 1064 45.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.6e-215 753.4 798 51.6
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.9e-214 749.2 1224 37.7
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.4e-205 721.1 551 69.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-191 674.9 571 59.0
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-191 674.5 637 57.1
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.4e-178 629.0 540 58.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 8.7e-163 578.9 471 66.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.5e-162 577.4 418 70.3
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.8e-147 525.8 484 57.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.2e-129 468.0 322 75.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-117 428.3 298 75.5
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.1e-86 323.9 1380 24.1
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.8e-81 307.8 210 74.3
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 6.2e-76 290.4 210 67.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.1e-75 289.7 263 54.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.1e-70 270.8 198 71.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.8e-57 228.0 213 56.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.4e-53 213.8 431 34.1
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.0e-51 206.8 503 29.6
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.8e-41 174.9 109 78.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.8e-38 166.0 1186 21.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.6e-23 116.3 92 64.1
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.1e-19 102.1 73 72.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 6.1e-15 87.8 235 30.2
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.8e-14 84.0 71 56.3
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.4e-13 82.0 82 53.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 7.5e-13 80.9 79 51.9
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-11 75.5 61 60.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 7.0e-11 74.3 50 78.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 7.0e-11 74.3 50 78.0
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.5e-10 71.6 76 44.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 5.9e-10 71.2 69 50.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 7.7e-10 70.9 73 56.2
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 7.7e-10 70.9 62 58.1
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.8e-09 68.6 71 57.7
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 8.6e-09 67.4 88 46.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 2.5e-08 65.9 63 52.4
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 7.2e-08 64.3 63 50.8
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.1e-07 62.8 164 27.4
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 4.7e-07 61.6 36 77.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 6.8e-06 57.8 46 56.5


User provided reference genes

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