Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 5.9e-301 1036.9 599 100.0
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 1.5e-59 235.0 563 34.3
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 3.4e-59 233.8 604 33.8
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 1.8e-55 221.5 546 34.1
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 4.4e-54 216.9 422 38.2
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 4.4e-54 216.9 581 33.4
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 8.2e-53 212.6 375 42.7
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 1.1e-52 212.2 382 43.5
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 3.5e-51 207.2 602 34.2
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 3.5e-51 207.2 620 33.7
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 2.2e-50 204.5 605 33.1
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 2.2e-50 204.5 343 43.4
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 5.0e-50 203.4 420 38.1
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 5.0e-50 203.4 658 32.4
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 2.5e-49 201.1 381 38.8
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 4.2e-49 200.3 617 31.8
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 7.2e-49 199.5 683 32.2
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 4.7e-48 196.8 305 43.0
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 4.7e-48 196.8 649 32.0
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 8.0e-48 196.1 692 33.1
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 1.4e-47 195.3 635 37.3
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 1.8e-47 194.9 626 32.6
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 1.1e-46 192.2 349 41.8
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.6e-46 191.0 601 33.3
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 5.7e-46 189.9 618 31.2
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 1.7e-45 188.3 564 31.4
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 2.2e-45 188.0 379 39.3
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 2.2e-45 188.0 690 31.6
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 8.2e-45 186.0 578 30.3
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 3.1e-44 184.1 692 30.3
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.6e-43 181.8 308 40.9
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.7e-43 181.0 290 41.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 3.5e-43 180.6 349 38.7
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 3.5e-43 180.6 420 37.6
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 5.9e-43 179.9 419 38.7
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 5.9e-43 179.9 290 41.0
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 1.3e-42 178.7 291 41.9
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 2.2e-42 177.9 509 32.0
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 6.5e-42 176.4 520 32.1
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 1.9e-41 174.9 285 41.1
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 9.4e-41 172.6 414 34.3
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.6e-40 171.8 284 43.3
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 8.0e-40 169.5 399 36.6
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 4.0e-39 167.2 593 30.7
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 4.0e-39 167.2 379 36.1
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 3.4e-38 164.1 392 39.5
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 1.7e-37 161.8 336 36.0
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 3.7e-37 160.6 212 47.6
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 8.3e-37 159.5 332 36.4
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 8.3e-37 159.5 385 40.0
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 1.4e-36 158.7 582 31.1
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 5.4e-36 156.8 259 41.7
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 7.0e-36 156.4 394 38.8
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 3.5e-35 154.1 337 37.7
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.0e-34 152.5 321 36.1
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.3e-34 152.1 570 29.6
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 1.3e-34 152.1 656 29.6
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 3.8e-34 150.6 583 29.7
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 3.8e-34 150.6 310 36.1
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 4.2e-33 147.1 301 36.5
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 4.2e-33 147.1 402 34.8
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 4.2e-33 147.1 361 33.2
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 7.2e-33 146.4 444 32.7
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 9.5e-33 146.0 297 36.7
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 1.2e-32 145.6 402 34.8
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 1.2e-32 145.6 449 34.3
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 2.1e-32 144.8 321 33.6
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 2.1e-32 144.8 551 29.2
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.1e-32 144.8 321 34.6
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 2.7e-32 144.4 269 39.0
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 2.7e-32 144.4 430 33.3
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.8e-31 141.7 427 33.5
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 2.3e-31 141.4 336 35.4
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 5.2e-31 140.2 422 34.6
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 8.8e-31 139.4 398 32.9
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.5e-30 138.7 391 36.1
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 3.4e-30 137.5 626 29.2
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 7.5e-30 136.3 344 33.4
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 1.7e-29 135.2 405 36.5
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 2.2e-29 134.8 313 35.5
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 4.9e-29 133.7 251 39.4
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 1.8e-28 131.7 282 34.0
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 3.1e-28 131.0 287 34.8
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 1.2e-27 129.0 248 37.1
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 1.6e-27 128.6 457 32.6
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 2.7e-27 127.9 210 40.0
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 3.5e-27 127.5 284 34.2
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 5.9e-27 126.7 422 33.4
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 5.9e-27 126.7 431 32.9
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.3e-26 125.6 211 38.4
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 2.3e-26 124.8 336 32.4
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 3.8e-26 124.0 285 35.8
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 6.6e-26 123.2 328 32.3
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 9.5e-25 119.4 327 31.8
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 6.8e-23 113.2 236 36.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 8.9e-23 112.8 243 36.6
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 1.2e-22 112.5 602 29.4
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 1.5e-22 112.1 514 28.4
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 9.8e-22 109.4 359 30.1
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 2.2e-21 108.2 199 38.2
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 2.2e-13 81.6 266 30.1
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 2.2e-13 81.6 270 30.0
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 4.7e-08 63.9 251 25.9
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 1.1e-07 62.8 268 27.6
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 2.3e-07 61.6 190 28.9
Migut.N01879 Erythranthe guttata HOM05D006718 ORTHO05D008492 6.8e-07 60.1 337 27.6


User provided reference genes

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