Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 3.1e-105 385.2 198 100.0
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 9.0e-65 250.8 158 79.7
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 1.1e-62 243.8 158 77.8
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.4e-62 243.4 196 64.8
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 1.4e-62 243.4 158 79.7
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 4.2e-62 241.9 154 79.2
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 1.6e-61 240.0 159 79.2
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 1.6e-61 240.0 158 76.6
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 3.5e-61 238.8 153 79.7
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 3.5e-61 238.8 157 77.1
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 3.5e-61 238.8 158 75.9
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 7.9e-61 237.7 157 75.2
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 7.9e-61 237.7 158 76.6
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 7.9e-61 237.7 155 78.1
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 7.9e-61 237.7 160 73.8
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 1.0e-60 237.3 179 69.3
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.0e-60 237.3 158 75.3
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 1.8e-60 236.5 158 75.9
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 1.8e-60 236.5 158 75.3
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 1.8e-60 236.5 155 77.4
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 3.9e-60 235.3 158 74.7
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 6.7e-60 234.6 158 74.7
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.7e-60 234.6 158 74.7
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 6.7e-60 234.6 158 75.3
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 8.7e-60 234.2 158 74.7
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 8.7e-60 234.2 158 74.7
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 8.7e-60 234.2 158 73.4
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 8.7e-60 234.2 158 73.4
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.1e-59 233.8 153 78.4
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 1.1e-59 233.8 158 75.3
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 1.1e-59 233.8 158 74.7
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.5e-59 233.4 158 74.1
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.9e-59 233.0 156 75.0
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 1.9e-59 233.0 158 72.2
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.9e-59 233.0 158 74.1
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.5e-59 232.6 158 73.4
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 4.3e-59 231.9 156 75.0
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 5.7e-59 231.5 160 73.8
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 7.4e-59 231.1 152 75.7
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 9.6e-59 230.7 158 72.2
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-58 230.3 158 73.4
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.6e-58 229.9 156 73.7
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.1e-58 229.6 180 67.8
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 2.8e-58 229.2 172 70.3
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 3.7e-58 228.8 158 73.4
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 6.3e-58 228.0 152 77.6
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 1.1e-57 227.3 157 72.0
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.1e-57 227.3 155 71.6
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 1.8e-57 226.5 158 73.4
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 3.1e-57 225.7 158 73.4
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 6.9e-57 224.6 158 72.2
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 6.9e-57 224.6 185 65.4
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 9.0e-57 224.2 158 72.2
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 3.4e-56 222.2 160 67.5
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 1.0e-55 220.7 168 67.3
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 2.2e-55 219.5 163 71.8
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 2.2e-55 219.5 160 71.9
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 2.9e-55 219.2 158 71.5
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 5.0e-55 218.4 156 71.2
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 8.4e-55 217.6 158 72.2
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 1.4e-54 216.9 160 68.1
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.9e-54 216.5 155 73.5
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 2.5e-54 216.1 162 68.5
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 4.2e-54 215.3 166 68.7
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 9.3e-54 214.2 160 65.0
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 1.2e-53 213.8 155 67.7
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 2.1e-53 213.0 158 67.1
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 2.1e-53 213.0 158 65.8
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 2.1e-53 213.0 159 66.7
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 3.5e-53 212.2 147 71.4
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.5e-53 212.2 149 72.5
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 7.9e-53 211.1 158 65.2
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 7.9e-53 211.1 158 65.2
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 7.9e-53 211.1 158 65.2
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 7.9e-53 211.1 154 68.2
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 7.9e-53 211.1 158 64.6
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.0e-52 210.7 151 70.9
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 1.0e-52 210.7 158 64.6
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 1.8e-52 209.9 158 65.2
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 1.8e-52 209.9 159 66.7
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 3.0e-52 209.1 158 64.6
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 3.0e-52 209.1 158 64.6
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 3.0e-52 209.1 144 75.0
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.5e-51 206.1 150 67.3
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 5.7e-51 204.9 161 67.1
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 9.7e-51 204.1 174 59.8
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 9.7e-51 204.1 148 69.6
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.8e-50 202.6 167 64.7
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 9.0e-49 197.6 157 65.0
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 2.6e-48 196.1 157 62.4
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 7.7e-48 194.5 158 61.4
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 2.9e-47 192.6 158 65.2
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 6.5e-47 191.4 166 57.8
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 1.1e-46 190.7 160 64.4
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.6e-45 186.8 165 63.6
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 2.0e-43 179.9 122 74.6
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 9.7e-43 177.6 157 59.2
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.4e-36 157.1 122 62.3
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 3.9e-36 155.6 161 57.1
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 2.2e-34 149.8 158 52.5
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 4.1e-33 145.6 158 48.7
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.9e-31 139.4 146 56.8
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 4.2e-30 135.6 92 72.8
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 9.4e-30 134.4 90 70.0
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 1.4e-28 130.6 154 44.8
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 5.7e-27 125.2 81 75.3
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 1.7e-26 123.6 79 75.9
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 4.1e-25 119.0 158 44.9
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.2e-19 100.9 75 69.3
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 2.6e-19 99.8 71 70.4
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 7.5e-19 98.2 149 42.3
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 8.3e-18 94.7 244 28.7
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.4e-17 94.0 80 62.5
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 1.8e-17 93.6 68 67.6
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 3.1e-17 92.8 65 64.6
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 3.5e-16 89.4 72 66.7
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.6e-13 80.5 86 52.3
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 2.2e-10 70.1 67 56.7
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.2e-08 64.3 83 53.0
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.5e-08 62.8 66 43.9
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 3.8e-07 59.3 128 32.8


User provided reference genes

Program Settings