Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 0.0e+00 1466.8 723 100.0
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 0.0e+00 1085.1 722 72.9
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 0.0e+00 1081.2 725 73.5
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 8.6e-307 1056.6 724 71.4
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.6e-305 1052.4 699 73.4
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 8.1e-305 1050.0 723 69.6
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.3e-304 1048.5 728 70.9
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 7.6e-303 1043.5 723 70.8
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 5.4e-301 1037.3 724 70.2
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 3.5e-300 1034.6 724 70.3
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.3e-294 1016.1 788 65.1
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.4e-293 1012.7 725 68.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.4e-288 996.1 729 65.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 5.3e-288 994.2 722 66.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.3e-288 994.2 722 66.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.2e-287 993.0 722 66.5
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 2.0e-287 992.3 722 67.2
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.9e-287 989.9 722 66.3
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 9.9e-287 989.9 727 66.9
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.9e-286 988.4 733 65.5
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.8e-286 988.0 726 65.7
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.8e-286 988.0 733 65.2
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.9e-285 985.7 733 65.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.2e-285 984.9 729 66.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 3.5e-284 981.5 721 65.6
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 6.6e-283 977.2 715 66.9
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 8.7e-283 976.9 725 65.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 8.7e-283 976.9 725 66.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.9e-282 975.7 726 64.7
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 2.8e-281 971.8 727 65.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.1e-280 969.9 738 63.4
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-280 969.5 729 65.6
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 2.0e-279 965.7 731 65.4
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.7e-278 962.6 725 65.7
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 3.8e-278 961.4 716 64.4
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 4.9e-278 961.1 716 64.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 7.1e-277 957.2 716 63.5
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.6e-276 956.1 715 63.6
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.6e-276 956.1 697 67.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.9e-274 949.1 764 61.4
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 7.4e-274 947.2 717 62.9
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 8.1e-273 943.7 763 60.6
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.4e-272 943.0 724 64.4
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.1e-272 941.8 725 63.3
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 4.0e-272 941.4 717 63.2
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.5e-271 939.5 719 63.1
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.9e-269 932.6 729 61.7
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 3.2e-269 931.8 722 62.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 5.5e-269 931.0 722 62.5
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.0e-267 926.8 725 65.9
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.3e-266 921.8 719 62.7
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 9.6e-266 920.2 720 62.9
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.3e-265 919.8 726 62.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.1e-264 916.8 721 61.9
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.4e-264 916.4 719 62.2
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.4e-264 916.4 725 61.8
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 5.3e-264 914.4 743 61.5
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.6e-263 912.1 729 61.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 3.8e-262 908.3 729 62.1
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 5.0e-262 907.9 729 60.8
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 5.0e-262 907.9 730 61.9
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 2.5e-261 905.6 717 62.3
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.6e-260 902.9 726 61.3
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.3e-259 899.0 727 60.2
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.8e-256 889.4 722 62.2
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 5.9e-255 884.4 728 59.3
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.0e-254 883.6 728 60.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.2e-252 876.7 727 59.7
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 6.7e-251 870.9 644 65.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 8.2e-249 864.0 671 63.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.8e-248 862.8 706 59.5
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 3.4e-247 858.6 725 59.6
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.5e-245 852.4 705 59.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.0e-243 845.5 722 57.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.8e-233 812.4 819 54.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.7e-233 812.0 742 55.3
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.1e-232 808.9 615 65.4
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 8.5e-230 800.8 618 67.5
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.7e-228 795.8 722 55.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 8.0e-228 794.3 735 54.0
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.0e-226 789.6 669 59.2
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 8.5e-222 774.2 698 55.6
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 9.5e-221 770.8 607 61.1
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.2e-220 770.4 733 55.3
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.7e-218 761.5 493 73.4
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 9.8e-218 760.8 604 61.1
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 2.8e-217 759.2 616 62.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.4e-216 756.9 765 52.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 4.1e-216 755.4 607 60.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 7.5e-202 708.0 454 74.7
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 9.2e-200 701.0 611 55.2
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.5e-197 693.0 527 66.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.8e-195 686.8 495 64.4
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 7.5e-194 681.4 619 56.9
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.2e-192 674.5 726 49.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 7.8e-191 671.4 640 54.1
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.9e-178 627.9 450 66.4
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.4e-163 580.9 728 44.5
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 6.7e-158 562.0 600 48.3
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.8e-155 553.9 737 43.3
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 1.2e-154 551.2 431 63.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 5.7e-141 505.8 379 65.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.5e-136 490.3 579 44.7
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.9e-134 483.0 629 45.5
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.3e-132 478.0 342 69.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 9.1e-131 471.9 443 53.7
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 9.1e-123 445.3 844 35.1
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.5e-114 416.4 541 42.3
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-109 401.4 479 44.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-102 377.9 289 61.6
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-99 368.6 471 43.5
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.8e-87 327.4 225 67.6
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.2e-76 291.2 227 65.6
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.7e-68 265.0 188 68.6
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.6e-63 248.4 670 29.6
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.6e-56 223.4 125 74.4
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 6.2e-55 219.9 242 46.3
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.4e-53 214.2 126 78.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 6.4e-52 209.9 318 41.2
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.1e-50 204.9 144 68.1
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.3e-48 197.2 126 75.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.3e-47 195.7 307 36.2
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.6e-45 186.4 190 55.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.9e-33 147.5 169 50.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.1e-33 147.1 107 61.7
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.7e-32 143.7 114 54.4
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.3e-31 142.5 147 50.3
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.8e-31 140.6 101 60.4
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 7.4e-24 116.7 86 73.3
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 2.2e-20 105.1 59 84.7
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 4.2e-19 100.9 112 50.9
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 6.1e-18 97.1 305 31.8
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.4e-17 95.9 66 62.1
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 3.1e-14 84.7 94 56.4
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 2.6e-13 81.6 61 57.4
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.1e-11 76.3 44 75.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 4.2e-11 74.3 88 51.1
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 3.0e-09 68.2 44 63.6
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.7e-07 62.4 49 57.1
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.8e-07 61.6 45 62.2
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.1e-06 57.8 67 38.8
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.3e-06 57.4 71 38.0
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 7.0e-06 57.0 71 36.6
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 9.1e-06 56.6 110 32.7


User provided reference genes

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