Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 3.4e-39 164.5 79 100.0
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.9e-21 105.5 59 84.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.9e-14 81.6 60 63.3
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 3.8e-14 81.3 59 61.0
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 6.4e-14 80.5 59 61.0
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.1e-13 79.7 59 61.0
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.4e-13 79.3 60 56.7
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.2e-13 77.8 59 61.0
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 4.2e-13 77.8 59 61.0
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.4e-13 77.4 56 62.5
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 7.1e-13 77.0 60 55.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 7.1e-13 77.0 60 55.0
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 9.3e-13 76.6 59 57.6
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 9.3e-13 76.6 60 56.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 9.3e-13 76.6 60 56.7
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 9.3e-13 76.6 60 56.7
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 9.3e-13 76.6 60 55.0
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 9.3e-13 76.6 59 59.3
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.2e-12 76.3 59 57.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.6e-12 75.9 60 56.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.1e-12 75.5 59 57.6
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 2.1e-12 75.5 60 55.0
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.6e-12 74.3 60 55.0
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 4.6e-12 74.3 60 60.0
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 6.0e-12 73.9 60 53.3
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.0e-12 73.9 60 56.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 7.9e-12 73.6 60 56.7
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.0e-11 73.2 60 55.0
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 1.0e-11 73.2 60 53.3
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.0e-11 73.2 59 59.3
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.0e-11 73.2 59 59.3
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.0e-11 73.2 60 51.7
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.3e-11 72.8 60 53.3
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.3e-11 72.8 59 55.9
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.8e-11 72.4 59 54.2
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.8e-11 72.4 60 53.3
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.8e-11 72.4 60 53.3
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.8e-11 72.4 60 56.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.0e-11 71.6 56 60.7
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 3.0e-11 71.6 59 55.9
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.0e-11 71.6 60 55.0
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 3.9e-11 71.2 60 53.3
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.9e-11 71.2 59 55.9
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 5.1e-11 70.9 60 53.3
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 6.7e-11 70.5 60 51.7
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 8.7e-11 70.1 59 55.9
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 8.7e-11 70.1 60 51.7
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 53.3
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 51.7
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 50.0
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 53.3
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 50.0
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.1e-10 69.7 60 50.0
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-10 69.3 60 50.0
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.5e-10 69.3 60 50.0
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.5e-10 69.3 60 51.7
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.9e-10 68.9 60 50.0
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.5e-10 68.6 60 50.0
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.5e-10 68.6 60 50.0
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.3e-10 68.2 60 50.0
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.3e-10 68.2 60 48.3
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 4.3e-10 67.8 60 51.7
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 5.6e-10 67.4 60 50.0
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 9.6e-10 66.6 57 52.6
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 9.6e-10 66.6 60 48.3
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.3e-09 66.2 60 48.3
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.6e-09 65.9 60 48.3
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.6e-09 65.9 61 52.5
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.1e-09 65.5 60 46.7
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.1e-09 65.5 56 51.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 2.8e-09 65.1 60 48.3
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 3.7e-09 64.7 45 57.8
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 3.7e-09 64.7 59 50.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.7e-09 64.7 60 51.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 4.8e-09 64.3 60 50.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 6.2e-09 63.9 60 48.3
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 6.2e-09 63.9 60 46.7
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.2e-09 63.9 60 48.3
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 8.1e-09 63.5 60 48.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 8.1e-09 63.5 60 46.7
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.1e-09 63.5 56 50.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.1e-08 63.2 60 50.0
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.8e-08 62.4 45 55.6
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.8e-08 62.4 60 45.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.8e-08 62.4 60 45.0
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 2.4e-08 62.0 60 46.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.0e-08 60.1 60 45.0
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.2e-07 59.7 60 46.7
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.9e-06 55.1 45 51.1
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.9e-06 55.1 51 45.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 8.4e-06 53.5 59 42.4


User provided reference genes

Program Settings