Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31740 Coffea canephora HOM05D000757 ORTHO05D154033 2.1e-39 165.2 85 100.0
Cc02_g39650 Coffea canephora HOM05D000757 ORTHO05D000622 2.7e-18 95.1 61 80.3
Gohir.D08G145500 Gossypium hirsutum HOM05D000757 ORTHO05D000622 8.2e-15 83.6 56 67.9
COL.COLO4_06241 Corchorus olitorius HOM05D000757 ORTHO05D000622 1.1e-14 83.2 56 69.6
Lj7A496T106 Lonicera japonica HOM05D000757 ORTHO05D000622 1.1e-14 83.2 57 70.2
Gohir.A08G124400 Gossypium hirsutum HOM05D000757 ORTHO05D000622 1.4e-14 82.8 56 67.9
MSTRG.17360 Avicennia marina HOM05D000757 ORTHO05D000622 2.4e-14 82.0 58 70.7
Gorai.004G150500 Gossypium raimondii HOM05D000757 ORTHO05D000622 2.4e-14 82.0 56 66.1
Dinv34228 Davidia involucrata HOM05D000757 ORTHO05D000622 9.0e-14 80.1 58 74.1
Thecc.01G338800 Theobroma cacao HOM05D000757 ORTHO05D000622 9.0e-14 80.1 58 67.2
Phvul.006G115000 Phaseolus vulgaris HOM05D000757 ORTHO05D000622 1.2e-13 79.7 58 72.4
QL08p046026 Quercus lobata HOM05D000757 ORTHO05D000622 1.2e-13 79.7 71 62.0
Ciclev10021778m.g Citrus clementina HOM05D000757 ORTHO05D000622 2.0e-13 79.0 71 60.6
Cfa003774 Carpinus fangiana HOM05D000757 ORTHO05D000622 2.6e-13 78.6 60 68.3
Haze_15686 Corylus avellana HOM05D000757 ORTHO05D000622 2.6e-13 78.6 60 68.3
Atru.chr5.712 Acer truncatum HOM05D000757 ORTHO05D000622 4.5e-13 77.8 71 59.2
CSS0022660 Camellia sinensis var. sinensis HOM05D000757 ORTHO05D000622 4.5e-13 77.8 60 70.0
Duzib133G1395 Durio zibethinus HOM05D000757 ORTHO05D000622 4.5e-13 77.8 58 63.8
HanXRQChr06g0170761 Helianthus annuus HOM05D000757 ORTHO05D000622 4.5e-13 77.8 61 63.9
HanXRQChr15g0472381 Helianthus annuus HOM05D000757 ORTHO05D000622 4.5e-13 77.8 61 63.9
MD07G1153700 Malus domestica HOM05D000757 ORTHO05D000622 4.5e-13 77.8 73 58.9
Potri.014G101300 Populus trichocarpa HOM05D000757 ORTHO05D000622 4.5e-13 77.8 74 58.1
Duzib138G0346 Durio zibethinus HOM05D000757 ORTHO05D000622 5.9e-13 77.4 58 67.2
Lj1g0024984 Lotus japonicus HOM05D000757 ORTHO05D000622 5.9e-13 77.4 58 67.2
EL10Ac1g00231 Beta vulgaris HOM05D000757 ORTHO05D000622 7.7e-13 77.0 58 67.2
Lj1g0003099 Lotus japonicus HOM05D000757 ORTHO05D000622 7.7e-13 77.0 58 67.2
Aqoxy5G04316 Aquilegia oxysepala HOM05D000757 ORTHO05D000622 1.0e-12 76.6 55 69.1
ECA236G0968 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.3e-12 76.3 58 63.8
MBI04_g06929_MAGBIO Magnolia biondii HOM05D000757 ORTHO05D000622 1.3e-12 76.3 54 68.5
Prupe.2G192600 Prunus persica HOM05D000757 ORTHO05D000622 1.3e-12 76.3 68 60.3
TWI59G1285 Tripterygium wilfordii HOM05D000757 ORTHO05D000622 1.3e-12 76.3 58 65.5
CANSAT56G0105 Cannabis sativa HOM05D000757 ORTHO05D000622 1.7e-12 75.9 63 66.7
Glyma.03G258900 Glycine max HOM05D000757 ORTHO05D000622 1.7e-12 75.9 58 69.0
Manes.01G243700 Manihot esculenta HOM05D000757 ORTHO05D000622 1.7e-12 75.9 54 70.4
Sabra14G0074500 Salix brachista HOM05D000757 ORTHO05D000622 1.7e-12 75.9 73 56.2
Cpa.g.sc96.63 Carica papaya HOM05D000757 ORTHO05D000622 2.9e-12 75.1 70 60.0
TWI14G1115 Tripterygium wilfordii HOM05D000757 ORTHO05D000622 2.9e-12 75.1 68 57.4
VMungo0540G0774 Vigna mungo HOM05D000757 ORTHO05D000622 2.9e-12 75.1 58 70.7
CiPaw.01G078600 Carya illinoinensis HOM05D000757 ORTHO05D000622 3.8e-12 74.7 60 65.0
Hund27176 Selenicereus undatus HOM05D000757 ORTHO05D000622 3.8e-12 74.7 42 83.3
Gohir.D07G141100 Gossypium hirsutum HOM05D000757 ORTHO05D000622 5.0e-12 74.3 58 62.1
Gorai.001G153000 Gossypium raimondii HOM05D000757 ORTHO05D000622 5.0e-12 74.3 58 62.1
Nitab4.5_0000307g0030 Nicotiana tabacum HOM05D000757 ORTHO05D000622 5.0e-12 74.3 61 63.9
Sc01g0002430 Simmondsia chinensis HOM05D000757 ORTHO05D000622 5.0e-12 74.3 46 80.4
AUR62022732 Chenopodium quinoa HOM05D000757 ORTHO05D000622 6.5e-12 73.9 46 80.4
Glyma.19G257600 Glycine max HOM05D000757 ORTHO05D000622 6.5e-12 73.9 58 67.2
Lalb_Chr04g0261451 Lupinus albus HOM05D000757 ORTHO05D000622 6.5e-12 73.9 57 64.9
AUR62004523 Chenopodium quinoa HOM05D000757 ORTHO05D000622 1.1e-11 73.2 46 80.4
Ca_09523_v3 Cicer arietinum L. HOM05D000757 ORTHO05D000622 1.4e-11 72.8 59 64.4
Migut.B01897 Erythranthe guttata HOM05D000757 ORTHO05D000622 1.4e-11 72.8 59 69.5
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.4e-11 72.8 65 58.5
Nitab4.5_0006770g0020 Nicotiana tabacum HOM05D000757 ORTHO05D000622 1.4e-11 72.8 61 63.9
PGR102G2679 Punica granatum HOM05D000757 ORTHO05D000622 1.4e-11 72.8 63 61.9
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.9e-11 72.4 52 67.3
Hma1.2p1_0634F.1_g192940 Hydrangea macrophylla HOM05D000757 ORTHO05D000622 1.9e-11 72.4 60 66.7
Hma1.2p1_1616F.1_g293745 Hydrangea macrophylla HOM05D000757 ORTHO05D000622 1.9e-11 72.4 60 66.7
RcHm_v2.0_Chr1g0360421 Rosa chinensis HOM05D000757 ORTHO05D000622 1.9e-11 72.4 52 67.3
FvH4_7g17011 Fragaria vesca HOM05D000757 ORTHO05D000622 2.5e-11 72.0 46 76.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 2.5e-11 72.0 46 76.1
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 2.5e-11 72.0 46 76.1
TAR629G1036 Trochodendron aralioides HOM05D000757 ORTHO05D000622 2.5e-11 72.0 61 62.3
Actinidia07980 Actinidia chinensis HOM05D000757 ORTHO05D000622 3.2e-11 71.6 69 58.0
PGSC0003DMG400000237 Solanum tuberosum HOM05D000757 ORTHO05D000622 3.2e-11 71.6 45 77.8
vmacro04288 Vaccinium macrocarpon HOM05D000757 ORTHO05D000622 3.2e-11 71.6 60 65.0
Potri.002G174700 Populus trichocarpa HOM05D000757 ORTHO05D000622 4.2e-11 71.2 74 54.1
Sopen01g039880 Solanum pennellii HOM05D000757 ORTHO05D000622 4.2e-11 71.2 41 82.9
Lsat_1_v5_gn_7_3161 Lactuca sativa HOM05D000757 ORTHO05D000622 5.5e-11 70.9 52 67.3
PSO063G0061 Papaver somniferum HOM05D000757 ORTHO05D000622 5.5e-11 70.9 40 85.0
HanXRQChr04g0120421 Helianthus annuus HOM05D000757 ORTHO05D000622 7.2e-11 70.5 55 65.5
Solyc01g096150.4 Solanum lycopersicum HOM05D000757 ORTHO05D000622 7.2e-11 70.5 41 82.9
Hund16728 Selenicereus undatus HOM05D000757 ORTHO05D000622 9.4e-11 70.1 42 81.0
TPR.G4689 Trifolium pratense HOM05D000757 ORTHO05D000622 1.2e-10 69.7 52 69.2
Nn1g00346 Nelumbo nucifera HOM05D000757 ORTHO05D000622 1.6e-10 69.3 55 61.8
Rhsim07G0002400 Rhododendron simsii HOM05D000757 ORTHO05D000622 1.6e-10 69.3 46 76.1
arahy.Tifrunner.gnm1.ann1.135E3G Arachis hypogaea HOM05D000757 ORTHO05D000622 2.7e-10 68.6 40 82.5
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 2.7e-10 68.6 46 73.9
Medtr7g117750 Medicago truncatula HOM05D000757 ORTHO05D000622 3.6e-10 68.2 45 75.6
PSO135G0098 Papaver somniferum HOM05D000757 ORTHO05D000622 4.6e-10 67.8 56 58.9
PSO384G4250 Papaver somniferum HOM05D000757 ORTHO05D000622 4.6e-10 67.8 62 56.5
Eucgr.E00032 Eucalyptus grandis HOM05D000757 ORTHO05D000622 6.1e-10 67.4 59 61.0
Peaxi162Scf00716g00433 Petunia axillaris HOM05D000757 ORTHO05D000622 6.1e-10 67.4 57 61.4
Psat3g001640 Pisum sativum HOM05D000757 ORTHO05D000622 6.1e-10 67.4 40 82.5
Manes.05G020300 Manihot esculenta HOM05D000757 ORTHO05D000622 7.9e-10 67.0 48 68.8
CAN.G360.6 Capsicum annuum HOM05D000757 ORTHO05D000622 1.8e-09 65.9 55 58.2
ATR0757G153 Amborella trichopoda HOM05D000757 ORTHO05D000622 2.3e-09 65.5 66 59.1
Peaxi162Scf00345g00025 Petunia axillaris HOM05D000757 ORTHO05D000622 2.3e-09 65.5 39 84.6
SGA_v2.0_scaffold5G03043 Striga asiatica HOM05D000757 ORTHO05D000622 2.3e-09 65.5 38 78.9
AT4G00905 Arabidopsis thaliana HOM05D000757 ORTHO05D000622 3.0e-09 65.1 68 55.9
BcaB01g02298 Brassica carinata HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
BcaC04g24112 Brassica carinata HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
A09p00920 Brassica napus HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
C09p01010 Brassica napus HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
BolC9t53034H Brassica oleracea HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
BraA09t35763Z Brassica rapa HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
Sp6g01210 Schrenkiella parvula HOM05D000757 ORTHO05D000622 5.1e-09 64.3 52 67.3
vmacro13858 Vaccinium macrocarpon HOM05D000757 ORTHO05D000622 5.1e-09 64.3 58 58.6
Nitab4.5_0000258g0250 Nicotiana tabacum HOM05D000757 ORTHO05D000622 6.7e-09 63.9 50 68.0
Nitab4.5_0003865g0080 Nicotiana tabacum HOM05D000757 ORTHO05D000622 6.7e-09 63.9 50 66.0
Aa31LG1G10600 Aethionema arabicum HOM05D002334 ORTHO05D002504 8.8e-09 63.5 44 68.2
CDE07G1221 Ceratophyllum demersum HOM05D000757 ORTHO05D000622 8.8e-09 63.5 36 77.8
SEGI_03488 Sequoiadendron giganteum HOM05D000757 ORTHO05D000622 8.8e-09 63.5 64 53.1
AL6G52480 Arabidopsis lyrata HOM05D000757 ORTHO05D000622 1.1e-08 63.2 53 64.2
Carub.0006s3596 Capsella rubella HOM05D000757 ORTHO05D000622 1.5e-08 62.8 40 77.5
Thhalv10028905m.g Eutrema salsugineum HOM05D000757 ORTHO05D000622 1.9e-08 62.4 52 65.4
Sp1g01060 Schrenkiella parvula HOM05D000757 ORTHO05D000622 2.5e-08 62.0 51 62.7
THA.LOC104801360 Tarenaya hassleriana HOM05D000757 ORTHO05D000622 2.5e-08 62.0 38 81.6
CARHR249420 Cardamine hirsuta HOM05D000757 ORTHO05D000622 3.3e-08 61.6 62 54.8
Dinv02417 Davidia involucrata HOM05D000757 ORTHO05D000622 3.3e-08 61.6 48 58.3
Thhalv10008506m.g Eutrema salsugineum HOM05D000757 ORTHO05D000622 3.3e-08 61.6 36 80.6
Migut.N01529 Erythranthe guttata HOM05D000757 ORTHO05D000622 4.3e-08 61.2 50 64.0
Pp3c3_23360 Physcomitrium patens HOM05D000757 ORTHO05D000622 4.3e-08 61.2 36 77.8
AL1G11250 Arabidopsis lyrata HOM05D000757 ORTHO05D000622 5.7e-08 60.8 36 80.6
AT1G01225 Arabidopsis thaliana HOM05D000757 ORTHO05D000622 5.7e-08 60.8 36 80.6
Carub.0008s1138 Capsella rubella HOM05D000757 ORTHO05D000622 5.7e-08 60.8 51 62.7
SHI13063 Sapria himalayana HOM05D000757 ORTHO05D000622 5.7e-08 60.8 40 67.5
BcaC07g42432 Brassica carinata HOM05D000757 ORTHO05D000622 7.4e-08 60.5 51 62.7
A09p69010 Brassica napus HOM05D000757 ORTHO05D000622 7.4e-08 60.5 51 62.7
C08p53580 Brassica napus HOM05D000757 ORTHO05D000622 7.4e-08 60.5 51 62.7
BolC8t52872H Brassica oleracea HOM05D000757 ORTHO05D000622 7.4e-08 60.5 51 62.7
BraA09t42238Z Brassica rapa HOM05D000757 ORTHO05D000622 7.4e-08 60.5 51 62.7
CARHR001240 Cardamine hirsuta HOM05D000757 ORTHO05D000622 7.4e-08 60.5 36 77.8
SalBow5G0060 Salvia bowleyana HOM05D000757 ORTHO05D000622 7.4e-08 60.5 70 50.0
HPP92_025535 Vanilla planifolia HOM05D000757 ORTHO05D000622 7.4e-08 60.5 36 69.4
MSTRG.28273 Avicennia marina HOM05D000757 ORTHO05D000622 1.3e-07 59.7 46 67.4
CSS0036706 Camellia sinensis var. sinensis HOM05D000757 ORTHO05D000622 1.3e-07 59.7 58 53.4
Rhsim07G0078600 Rhododendron simsii HOM05D000757 ORTHO05D000622 1.7e-07 59.3 63 50.8
HPP92_025501 Vanilla planifolia HOM05D000757 ORTHO05D000622 2.2e-07 58.9 36 69.4
Aa31LG5G1020 Aethionema arabicum HOM05D000757 ORTHO05D000622 3.7e-07 58.2 51 60.8
Solyc05g050520.4 Solanum lycopersicum HOM05D000757 ORTHO05D000622 6.3e-07 57.4 55 52.7
Cfa003775 Carpinus fangiana HOM05D000757 ORTHO05D000622 8.2e-07 57.0 42 64.3
Sopen05g028930 Solanum pennellii HOM05D000757 ORTHO05D000622 8.2e-07 57.0 55 50.9
Dinv12195 Davidia involucrata HOM05D000757 ORTHO05D000622 1.1e-06 56.6 54 50.0
ClCG05G000670 Citrullus lanatus HOM05D000757 ORTHO05D000622 1.4e-06 56.2 33 84.8
MELO3C006006.2 Cucumis melo HOM05D000757 ORTHO05D000622 1.4e-06 56.2 33 84.8
Zm00001eb198640 Zea mays HOM05D000757 ORTHO05D000622 1.8e-06 55.8 36 66.7
Lj2A158T82 Lonicera japonica HOM05D000757 ORTHO05D000622 2.4e-06 55.5 59 52.5
Mapoly0021s0148 Marchantia polymorpha HOM05D000757 ORTHO05D000622 2.4e-06 55.5 36 72.2
Os08g0546900 Oryza sativa ssp. japonica HOM05D000757 ORTHO05D000622 2.4e-06 55.5 53 50.9
CsaV3_3G007890 Cucumis sativus L. HOM05D002334 ORTHO05D002504 4.1e-06 54.7 35 77.1
Actinidia27294 Actinidia chinensis HOM05D000757 ORTHO05D000622 9.1e-06 53.5 59 49.2
Lsat_1_v5_gn_3_140401 Lactuca sativa HOM05D000757 ORTHO05D000622 9.1e-06 53.5 36 69.4


User provided reference genes

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