Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31650 Coffea canephora HOM05D006905 ORTHO05D003398 1.3e-63 246.1 119 100.0
Cc02_g31660 Coffea canephora HOM05D006905 ORTHO05D003398 1.1e-36 156.8 86 88.4
Oeu023372.2 Olea europaea HOM05D006905 ORTHO05D003398 4.6e-24 114.8 98 56.1
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 3.0e-23 112.1 78 59.0
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 5.7e-22 107.8 69 62.3
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 7.4e-22 107.5 74 60.8
Ah.06g192620 Amaranthus hybridus HOM05D000416 ORTHO05D000322 3.7e-21 105.1 96 47.9
AUR62004986 Chenopodium quinoa HOM05D006905 ORTHO05D003398 3.7e-21 105.1 75 54.7
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 3.7e-21 105.1 70 60.0
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 4.8e-21 104.8 73 58.9
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 4.8e-21 104.8 75 60.0
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 4.8e-21 104.8 72 58.3
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 6.3e-21 104.4 67 61.2
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 8.2e-21 104.0 76 60.5
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 8.2e-21 104.0 78 59.0
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 1.1e-20 103.6 71 60.6
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.1e-20 103.6 69 59.4
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.4e-20 103.2 70 58.6
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.8e-20 102.8 65 64.6
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 1.8e-20 102.8 70 58.6
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 1.8e-20 102.8 71 56.3
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 2.4e-20 102.4 65 64.6
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 2.4e-20 102.4 69 59.4
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 3.1e-20 102.1 86 52.3
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.1e-20 102.1 70 57.1
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 3.1e-20 102.1 75 62.7
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 3.1e-20 102.1 75 62.7
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 4.1e-20 101.7 76 51.3
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 4.1e-20 101.7 76 59.2
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 5.3e-20 101.3 75 61.3
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 5.3e-20 101.3 69 58.0
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 5.3e-20 101.3 70 57.1
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 6.9e-20 100.9 68 60.3
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 9.0e-20 100.5 62 69.4
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 9.0e-20 100.5 70 57.1
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 9.0e-20 100.5 87 56.3
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 1.2e-19 100.1 66 57.6
FAN05G4190 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.2e-19 100.1 70 55.7
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 1.2e-19 100.1 70 60.0
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.5e-19 99.8 75 49.3
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.5e-19 99.8 82 50.0
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 1.5e-19 99.8 93 50.5
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 1.5e-19 99.8 86 54.7
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 2.0e-19 99.4 71 56.3
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 2.0e-19 99.4 71 56.3
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 2.0e-19 99.4 72 54.2
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 4.5e-19 98.2 61 67.2
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 5.9e-19 97.8 68 60.3
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 7.7e-19 97.4 75 52.0
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.0e-18 97.1 70 54.3
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 1.0e-18 97.1 73 52.1
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 1.3e-18 96.7 82 51.2
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 3.8e-18 95.1 57 66.7
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 3.8e-18 95.1 73 50.7
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 5.0e-18 94.7 70 54.3
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 5.0e-18 94.7 56 69.6
ClCG02G016440 Citrullus lanatus HOM05D006905 ORTHO05D003398 6.5e-18 94.4 87 51.7
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 8.5e-18 94.0 84 51.2
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.1e-17 93.6 70 50.0
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 1.4e-17 93.2 56 69.6
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 1.4e-17 93.2 81 51.9
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 1.9e-17 92.8 56 67.9
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 2.5e-17 92.4 69 56.5
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 2.5e-17 92.4 56 66.1
Sabra13G0035600 Salix brachista HOM05D006905 ORTHO05D003398 4.2e-17 91.7 72 56.9
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 5.5e-17 91.3 64 54.7
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 9.4e-17 90.5 58 65.5
Hma1.2p1_0083F.1_g042790 Hydrangea macrophylla HOM05D006905 ORTHO05D003398 2.1e-16 89.4 72 56.9
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 2.7e-16 89.0 62 58.1
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 2.7e-16 89.0 65 56.9
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 2.7e-16 89.0 56 66.1
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 2.7e-16 89.0 71 53.5
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 3.6e-16 88.6 81 50.6
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 3.6e-16 88.6 81 49.4
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 4.6e-16 88.2 59 62.7
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 4.6e-16 88.2 70 50.0
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 7.9e-16 87.4 62 54.8
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 7.9e-16 87.4 59 62.7
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 1.0e-15 87.0 59 61.0
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 1.0e-15 87.0 59 61.0
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 1.0e-15 87.0 81 46.9
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 1.4e-15 86.7 81 48.1
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 3.0e-15 85.5 56 60.7
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 8.8e-15 84.0 56 62.5
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 8.8e-15 84.0 80 46.2
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 8.8e-15 84.0 80 46.2
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 2.0e-14 82.8 80 47.5
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.5e-14 82.4 70 45.7
HanXRQChr06g0176711 Helianthus annuus HOM05D006905 ORTHO05D003398 5.7e-14 81.3 53 64.2
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 5.7e-14 81.3 70 44.3
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.3e-13 80.1 70 42.9
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.3e-13 80.1 70 42.9
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 1.3e-13 80.1 59 49.2
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 1.2e-11 73.6 58 50.0
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 1.7e-10 69.7 90 41.1
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 4.7e-08 61.6 43 53.5
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 2.3e-07 59.3 78 35.9
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 4.4e-06 55.1 59 44.1
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 9.7e-06 53.9 57 40.4


User provided reference genes

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