Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.4e-99 366.3 186 100.0
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.4e-80 302.4 171 88.9
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 9.3e-80 300.4 176 84.1
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 7.9e-79 297.4 176 85.2
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.0e-78 297.0 176 83.0
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.0e-78 297.0 176 81.2
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.3e-78 296.6 176 85.2
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.9e-78 295.0 176 83.5
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 6.7e-78 294.3 176 83.0
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 1.5e-77 293.1 178 81.5
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 4.3e-77 291.6 178 81.5
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 9.6e-77 290.4 176 81.2
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.8e-76 288.9 176 81.8
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.7e-76 288.5 182 77.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 4.8e-76 288.1 176 81.2
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 4.8e-76 288.1 176 81.2
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.1e-75 287.0 176 79.5
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.8e-75 286.2 172 85.5
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-75 285.8 176 79.5
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 5.3e-75 284.6 176 80.1
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 6.9e-75 284.3 180 79.4
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.2e-74 283.5 175 82.3
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.6e-74 282.3 176 80.7
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 2.6e-74 282.3 176 79.5
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 2.6e-74 282.3 176 80.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 3.4e-74 282.0 176 79.5
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 7.6e-74 280.8 179 77.1
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.0e-73 280.4 173 82.1
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.3e-73 280.0 176 80.1
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.7e-73 279.6 177 79.7
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.7e-73 279.6 177 76.8
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.5e-73 277.7 176 78.4
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.4e-73 277.3 176 78.4
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 8.4e-73 277.3 177 76.8
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.1e-72 276.9 176 75.6
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.4e-72 276.6 175 78.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.4e-72 276.6 171 81.3
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.9e-72 276.2 176 77.8
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 3.2e-72 275.4 177 78.0
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 3.2e-72 275.4 177 76.3
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 4.2e-72 275.0 176 77.3
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 9.3e-72 273.9 171 80.1
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 1.2e-71 273.5 176 77.8
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 2.1e-71 272.7 177 75.7
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 2.1e-71 272.7 177 75.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.5e-71 271.9 171 79.5
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.0e-70 270.4 177 75.7
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.3e-70 270.0 176 76.7
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.8e-70 269.6 172 80.8
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.8e-70 269.6 179 74.3
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 2.3e-70 269.2 177 74.6
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.3e-70 269.2 176 75.0
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.3e-70 269.2 172 79.1
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.0e-70 268.9 171 79.5
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 3.0e-70 268.9 178 75.8
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.1e-70 268.1 172 79.7
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 6.7e-70 267.7 180 72.2
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 6.7e-70 267.7 176 76.1
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.1e-69 266.9 177 73.4
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.1e-69 266.9 177 74.0
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.5e-69 266.5 177 76.3
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.5e-69 266.5 172 80.2
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 1.5e-69 266.5 176 75.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.9e-69 266.2 181 73.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.9e-69 266.2 176 75.0
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 2.5e-69 265.8 179 73.2
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 3.3e-69 265.4 177 72.9
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.3e-69 265.4 172 78.5
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 5.7e-69 264.6 177 72.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.3e-68 263.5 198 69.7
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.7e-68 261.9 171 77.8
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 3.7e-68 261.9 176 72.7
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 3.7e-68 261.9 177 72.3
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.8e-67 259.6 177 71.8
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.8e-67 259.6 177 71.8
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 3.1e-67 258.8 177 73.4
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 4.1e-67 258.5 171 76.0
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.5e-66 256.5 171 74.3
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.5e-66 256.5 145 86.2
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.3e-65 253.4 172 76.7
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.7e-65 253.1 171 74.3
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 5.0e-65 251.5 190 66.8
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 8.5e-65 250.8 179 69.8
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.1e-64 250.4 183 67.8
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.1e-64 250.4 179 72.1
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 7.2e-64 247.7 172 71.5
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 7.2e-64 247.7 172 71.5
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 7.2e-64 247.7 170 70.6
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 2.7e-63 245.7 171 71.3
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 6.1e-63 244.6 171 70.8
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 8.8e-62 240.7 267 55.1
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 8.8e-62 240.7 145 78.6
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.5e-61 240.0 172 69.8
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.3e-60 236.9 173 67.6
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 6.3e-60 234.6 251 54.2
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.9e-56 223.0 174 62.6
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.9e-56 223.0 173 66.5
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 3.2e-56 222.2 153 73.2
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 9.4e-56 220.7 174 62.1
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 9.7e-53 210.7 173 62.4
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.2e-48 195.7 141 69.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 4.2e-48 195.3 135 74.8
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.5e-48 194.9 133 73.7
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.1e-47 193.0 137 72.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.1e-43 177.6 101 87.1
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.8e-36 156.0 98 73.5
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 2.8e-36 156.0 134 59.7
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 8.3e-36 154.5 134 58.2
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.7e-34 149.4 134 56.7
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.5e-32 143.7 134 56.0
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.0e-30 135.6 134 59.7
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 3.7e-28 129.0 79 75.9
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.3e-28 127.9 78 76.9
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.8e-27 126.7 78 75.6
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.5e-26 122.5 78 73.1
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 5.2e-22 108.6 152 44.7
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.4e-21 105.5 61 80.3
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.3e-20 104.0 61 78.7
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 2.8e-20 102.8 67 77.6
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.3e-17 93.2 77 61.0
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-15 87.0 54 75.9
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 4.6e-10 68.9 40 75.0
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.3e-09 67.4 39 82.1
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 3.9e-09 65.9 40 70.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.9e-09 65.9 39 74.4
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 9.5e-08 61.2 35 85.7
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 4.0e-06 55.8 120 37.5


User provided reference genes

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