Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.2e-184 647.9 331 100.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.8e-142 507.7 335 74.6
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.2e-141 506.9 321 76.3
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.9e-140 502.3 342 72.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.9e-140 501.5 344 71.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 8.4e-140 500.7 337 77.4
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.1e-139 500.4 344 71.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.4e-139 499.2 327 73.7
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 7.1e-139 497.7 322 79.5
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 7.1e-139 497.7 337 73.3
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-138 496.5 322 75.5
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.7e-138 495.7 343 72.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.0e-137 493.8 328 73.5
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.3e-137 493.4 325 74.5
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.7e-137 493.0 332 72.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.7e-137 493.0 327 78.0
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.3e-137 492.7 335 77.3
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.3e-137 492.7 327 78.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.0e-137 492.3 335 73.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.9e-137 491.9 332 73.2
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 5.1e-137 491.5 335 74.9
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.5e-136 490.0 348 70.1
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.5e-136 490.0 331 73.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.9e-136 489.6 341 71.8
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.9e-136 489.6 334 72.5
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.5e-136 489.2 334 75.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 3.3e-136 488.8 264 86.4
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 3.3e-136 488.8 264 86.4
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.6e-136 488.0 289 78.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.6e-136 488.0 331 70.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 5.6e-136 488.0 264 86.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 7.3e-136 487.6 323 72.8
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 7.3e-136 487.6 322 78.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 7.3e-136 487.6 335 74.6
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 7.3e-136 487.6 265 84.9
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.3e-136 487.6 336 72.6
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.2e-135 486.9 332 74.7
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.2e-135 486.9 339 71.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-135 485.0 339 69.9
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-135 485.0 339 69.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 6.2e-135 484.6 322 73.9
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-134 483.8 326 71.5
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-134 483.8 326 71.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.4e-134 483.4 333 70.9
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.8e-134 483.0 330 70.6
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.8e-134 483.0 332 71.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-134 483.0 340 68.8
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.4e-134 482.6 329 71.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.4e-134 482.6 329 71.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.4e-134 482.6 333 73.0
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.1e-134 482.3 326 71.5
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 4.0e-134 481.9 326 71.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.0e-134 481.9 340 70.3
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 5.2e-134 481.5 318 73.3
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 5.2e-134 481.5 329 71.1
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 5.2e-134 481.5 339 69.6
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.8e-134 481.1 339 69.3
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 8.9e-134 480.7 287 79.1
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-133 480.3 329 71.4
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-133 480.3 288 78.8
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-133 479.9 329 70.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.5e-133 479.9 348 69.3
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.5e-133 479.9 295 75.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.5e-133 479.9 324 73.5
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-133 478.8 265 83.0
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.4e-133 478.8 329 71.4
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.4e-133 478.4 286 78.7
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.4e-133 478.4 288 78.8
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 4.4e-133 478.4 268 82.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 5.8e-133 478.0 330 70.3
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 5.8e-133 478.0 338 70.7
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 7.6e-133 477.6 261 83.5
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 7.6e-133 477.6 340 70.3
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.6e-133 477.6 321 72.9
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 7.6e-133 477.6 319 71.8
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.7e-132 476.5 335 70.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.7e-132 476.5 338 70.7
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 4.9e-132 474.9 327 70.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 6.4e-132 474.6 337 75.1
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.4e-131 473.4 329 73.9
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.2e-131 472.2 329 69.3
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.2e-131 472.2 329 69.3
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 3.2e-131 472.2 323 70.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 5.4e-131 471.5 340 68.5
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 5.4e-131 471.5 328 74.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.4e-131 471.5 336 69.9
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 9.3e-131 470.7 261 82.0
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.6e-130 469.9 335 69.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.1e-130 469.5 262 81.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.1e-130 469.5 333 69.7
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-130 469.2 321 70.7
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.7e-130 469.2 318 75.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.7e-130 469.2 333 69.7
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 3.5e-130 468.8 261 81.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 6.0e-130 468.0 329 69.6
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 7.8e-130 467.6 261 82.4
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.9e-129 465.3 329 71.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 5.1e-129 464.9 329 69.6
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 4.3e-128 461.8 262 80.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.3e-128 461.8 330 68.5
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 4.3e-128 461.8 284 75.7
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.3e-128 461.1 323 69.3
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.3e-127 460.3 240 87.1
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-127 460.3 289 75.1
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 3.6e-127 458.8 289 75.4
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.1e-127 457.6 323 68.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 8.1e-127 457.6 326 67.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 8.1e-127 457.6 326 73.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 8.1e-127 457.6 346 67.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 4.0e-126 455.3 265 80.4
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 4.0e-126 455.3 334 67.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 6.9e-126 454.5 324 67.3
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-125 453.4 330 71.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.6e-125 452.6 343 66.5
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.9e-124 449.1 240 85.4
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.4e-118 429.5 233 84.1
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.0e-117 426.4 328 65.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 3.2e-115 419.1 268 73.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 3.2e-115 419.1 270 73.0
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 5.5e-115 418.3 264 75.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 4.6e-114 415.2 292 71.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.1e-112 410.6 218 85.3
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.5e-112 410.2 219 84.0
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-112 409.5 219 85.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.3e-112 408.7 219 85.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 5.6e-112 408.3 217 84.8
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.8e-111 406.0 214 86.4
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.9e-108 395.2 327 60.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.5e-107 391.7 330 59.7
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.7e-106 389.4 208 86.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 6.7e-105 384.8 265 68.7
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 7.4e-104 381.3 290 71.7
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.1e-98 363.2 263 65.0
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.9e-97 359.0 218 72.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.6e-90 337.0 294 56.5
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.7e-85 318.2 236 68.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.6e-80 303.1 233 60.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.4e-80 301.6 162 84.6
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.7e-76 290.4 152 87.5
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 7.5e-72 275.0 177 72.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-71 274.2 205 65.9
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-70 270.8 218 63.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.9e-69 265.4 216 64.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 3.8e-68 262.7 162 75.3
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 6.1e-66 255.4 219 62.1
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.8e-57 227.3 127 80.3
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-53 214.2 147 68.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-40 171.4 159 56.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 6.6e-20 102.4 82 62.2
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.4e-17 94.7 113 48.7
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.4e-16 90.1 109 49.5
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-12 78.6 49 67.3
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 5.1e-12 76.3 112 43.8


User provided reference genes

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