Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 2798.1 1443 100.0
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1671.8 1447 60.9
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1665.6 1476 60.1
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1656.0 1448 60.4
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1651.3 1455 60.6
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1646.3 1448 61.3
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1636.7 1485 59.1
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1594.3 1438 59.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1592.8 1452 59.2
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1590.1 1451 60.4
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1589.7 1430 59.7
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1582.4 1482 58.0
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1570.8 1437 58.7
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1570.8 1448 59.2
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1569.7 1432 59.2
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1566.6 1430 59.0
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1560.8 1460 58.8
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1541.6 1456 58.4
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1539.6 1498 58.3
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1536.2 1435 57.4
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1520.8 1446 57.5
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1518.1 1451 57.4
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1515.0 1451 57.3
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1513.0 1433 58.5
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1503.4 1437 58.6
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1496.9 1463 56.1
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1487.2 1510 54.6
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1482.2 1432 57.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1476.8 1432 57.3
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1468.8 1428 56.8
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1459.1 1525 52.9
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1458.7 1503 54.3
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1458.4 1386 57.8
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1455.7 1506 54.3
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1439.1 1428 55.9
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1432.5 1369 57.1
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1429.8 1444 55.3
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1422.9 1451 55.3
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1411.0 1407 55.7
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1406.3 1447 54.7
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1404.8 1212 62.0
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1387.5 1452 53.9
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1381.7 1445 53.6
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1359.4 1467 52.6
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1355.5 1459 52.5
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1347.8 1442 52.1
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1340.9 1454 52.7
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1338.2 1455 52.7
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1334.7 1477 51.5
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1334.3 1464 51.9
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1315.8 1459 51.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1310.8 1454 51.2
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1302.3 1315 55.0
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1281.2 1329 54.9
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1150.6 1186 53.3
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1099.0 1479 46.8
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.5e-294 1015.8 967 57.3
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 7.0e-287 991.5 1260 46.1
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 4.3e-284 982.2 967 55.9
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 2.3e-282 976.5 757 67.4
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 5.8e-273 945.3 1238 44.1
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 4.0e-266 922.5 1473 39.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 2.4e-263 913.3 1442 38.9
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 5.8e-257 892.1 1045 48.4
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 9.3e-255 884.8 910 55.3
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 5.9e-201 706.1 542 66.4
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 4.9e-195 686.4 1183 37.7
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.2e-193 681.8 635 60.5
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.1e-191 675.2 675 54.4
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 2.4e-186 657.5 534 65.5
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.2e-153 548.9 970 35.9
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.9e-152 543.9 735 44.4
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 6.9e-141 506.5 717 43.8
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-126 458.0 411 57.9
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.2e-70 272.3 203 70.4
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 2.1e-65 255.8 251 59.4
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.0e-56 224.9 184 63.0
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.5e-50 205.7 322 40.7
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-48 200.3 264 40.9
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.9e-46 192.2 219 53.4
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 4.6e-44 184.9 136 72.1
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 3.3e-42 178.7 127 70.1
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.1e-41 176.0 142 61.3
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 4.4e-39 168.3 120 67.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.6e-39 167.5 157 55.4
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.9e-29 136.3 210 39.0
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 9.6e-26 124.0 104 67.3
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 3.8e-22 112.1 115 49.6
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 3.8e-22 112.1 115 49.6
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 1.1e-21 110.5 115 48.7
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.9e-19 102.1 202 37.1
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.0e-15 89.7 86 55.8
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.9e-14 85.1 51 86.3
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 6.5e-14 84.7 73 58.9
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.1e-13 84.0 134 44.0
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.1e-13 81.3 301 25.2
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 3.9e-11 75.5 261 28.7
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 5.1e-11 75.1 120 42.5
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 6.7e-11 74.7 134 38.1
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 6.3e-09 68.2 40 85.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 8.2e-09 67.8 109 35.8
Zm00001eb010750 Zea mays HOM05D007170 ORTHO05D009243 5.3e-08 65.1 103 37.9
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.0e-07 63.2 50 64.0
CBR_g54163 Chara braunii HOM05D007170 ORTHO05D009243 2.2e-06 59.7 197 28.9
Zm00001eb031540 Zea mays HOM05D007170 ORTHO05D009243 2.2e-06 59.7 103 36.9
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.9e-06 59.3 62 51.6


User provided reference genes

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