Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 2.6e-59 231.9 121 100.0
Peaxi162Scf00647g00010 Petunia axillaris HOM05D002924 ORTHO05D003122 7.8e-19 97.4 134 49.3
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 6.6e-18 94.4 120 46.7
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 1.5e-17 93.2 123 48.8
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.7e-16 88.2 119 47.1
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-15 87.0 125 42.4
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 2.3e-15 85.9 121 44.6
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.2e-15 84.7 119 46.2
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 8.9e-15 84.0 122 43.4
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 8.9e-15 84.0 129 41.1
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.5e-14 83.2 119 46.2
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 2.0e-14 82.8 130 43.1
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 2.6e-14 82.4 138 41.3
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.6e-14 82.4 128 41.4
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 3.4e-14 82.0 126 42.1
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.4e-14 82.0 129 45.0
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.4e-14 82.0 129 45.0
Oeu016449.1 Olea europaea HOM05D002924 ORTHO05D003122 5.8e-14 81.3 72 65.3
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 5.8e-14 81.3 122 39.3
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.5e-14 80.9 116 46.6
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.5e-14 80.9 118 44.1
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 9.8e-14 80.5 118 44.1
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.3e-13 80.1 121 43.8
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 2.2e-13 79.3 125 42.4
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 2.9e-13 79.0 121 43.8
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.7e-13 78.6 129 41.9
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.7e-13 78.6 121 43.8
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.7e-13 78.6 121 43.0
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 3.7e-13 78.6 120 37.5
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.7e-13 78.6 121 40.5
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 4.9e-13 78.2 122 42.6
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 6.4e-13 77.8 121 40.5
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 8.3e-13 77.4 137 38.0
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 1.1e-12 77.0 128 38.3
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.1e-12 77.0 132 42.4
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 1.4e-12 76.6 134 38.8
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 2.4e-12 75.9 125 40.8
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 4.1e-12 75.1 85 44.7
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 5.4e-12 74.7 137 40.1
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 5.4e-12 74.7 124 41.1
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 9.2e-12 73.9 123 37.4
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 9.2e-12 73.9 121 39.7
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 2.1e-11 72.8 128 39.8
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 2.7e-11 72.4 93 46.2
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 3.5e-11 72.0 135 38.5
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 3.5e-11 72.0 142 36.6
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 3.5e-11 72.0 140 39.3
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.5e-11 72.0 123 38.2
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 4.6e-11 71.6 92 47.8
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 6.0e-11 71.2 128 43.0
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 6.0e-11 71.2 93 47.3
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 6.0e-11 71.2 91 47.3
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 6.0e-11 71.2 137 38.0
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 7.8e-11 70.9 127 44.1
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 7.8e-11 70.9 126 38.9
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.0e-10 70.5 130 42.3
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 1.0e-10 70.5 122 41.0
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-10 70.5 113 44.2
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 1.3e-10 70.1 135 37.8
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.3e-10 70.1 117 40.2
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.3e-10 70.1 133 39.1
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 1.3e-10 70.1 125 36.0
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.7e-10 69.7 120 36.7
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.7e-10 69.7 120 41.7
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 1.7e-10 69.7 124 37.1
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 1.7e-10 69.7 119 38.7
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.7e-10 69.7 120 39.2
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 2.3e-10 69.3 127 39.4
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.3e-10 69.3 124 41.1
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 3.0e-10 68.9 129 39.5
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 3.9e-10 68.6 140 37.9
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 6.6e-10 67.8 138 36.2
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 6.6e-10 67.8 139 36.0
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 6.6e-10 67.8 121 36.4
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 8.6e-10 67.4 117 36.8
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 8.6e-10 67.4 105 40.0
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 1.1e-09 67.0 140 33.6
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 1.1e-09 67.0 135 37.8
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.1e-09 67.0 127 37.0
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 1.1e-09 67.0 124 33.9
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 1.1e-09 67.0 124 40.3
SalBow4G2506 Salvia bowleyana HOM05D002924 ORTHO05D003122 1.5e-09 66.6 120 40.8
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 1.5e-09 66.6 129 35.7
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 1.9e-09 66.2 135 38.5
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 1.9e-09 66.2 92 42.4
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 2.5e-09 65.9 146 33.6
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 3.3e-09 65.5 121 38.0
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 3.3e-09 65.5 138 34.8
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 4.3e-09 65.1 131 37.4
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 4.3e-09 65.1 136 36.0
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 4.3e-09 65.1 91 42.9
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.3e-09 65.1 120 36.7
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 5.6e-09 64.7 156 30.8
Lalb_Chr22g0360811 Lupinus albus HOM05D011327 ORTHO05D013488 5.6e-09 64.7 116 37.1
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 7.3e-09 64.3 126 38.9
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 7.3e-09 64.3 134 37.3
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 7.3e-09 64.3 124 36.3
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 7.3e-09 64.3 124 33.9
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.3e-09 64.3 136 37.5
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 9.5e-09 63.9 126 37.3
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 9.5e-09 63.9 140 37.1
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 9.5e-09 63.9 99 37.4
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 9.5e-09 63.9 117 35.9
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 1.2e-08 63.5 125 36.0
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 1.2e-08 63.5 117 36.8
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 2.1e-08 62.8 138 34.8
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 2.8e-08 62.4 137 35.8
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 2.8e-08 62.4 103 39.8
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 2.8e-08 62.4 128 38.3
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 2.8e-08 62.4 117 40.2
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 4.7e-08 61.6 117 35.9
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 4.7e-08 61.6 122 35.2
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 4.7e-08 61.6 125 37.6
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 4.7e-08 61.6 82 42.7
Phvul.006G001900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 4.7e-08 61.6 121 35.5
VMungo0540G1396 Vigna mungo HOM05D011327 ORTHO05D013488 4.7e-08 61.6 115 34.8
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.2e-08 61.2 131 35.1
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 6.2e-08 61.2 124 39.5
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 6.2e-08 61.2 122 38.5
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 8.1e-08 60.8 116 37.1
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 8.1e-08 60.8 132 35.6
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 8.1e-08 60.8 82 40.2
Migut.B01115 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.1e-07 60.5 60 51.7
Oeu038466.1 Olea europaea HOM05D002924 ORTHO05D003122 1.1e-07 60.5 72 48.6
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 1.4e-07 60.1 119 34.5
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 1.4e-07 60.1 119 37.8
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.4e-07 60.1 134 35.8
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 1.4e-07 60.1 126 32.5
Solyc01g097060.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.4e-07 60.1 110 40.0
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.4e-07 60.1 128 33.6
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 1.4e-07 60.1 86 39.5
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 1.8e-07 59.7 127 33.9
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 1.8e-07 59.7 92 41.3
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.8e-07 59.7 130 38.5
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.8e-07 59.7 132 35.6
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 2.3e-07 59.3 117 37.6
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 2.3e-07 59.3 130 39.2
Glyma.02G310100 Glycine max HOM05D011327 ORTHO05D013488 2.3e-07 59.3 120 38.3
Glyma.14G002600 Glycine max HOM05D011327 ORTHO05D013488 2.3e-07 59.3 108 35.2
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 3.1e-07 58.9 132 36.4
Dinv20268 Davidia involucrata HOM05D002924 ORTHO05D003122 3.1e-07 58.9 94 43.6
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 4.0e-07 58.5 102 40.2
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 4.0e-07 58.5 128 35.9
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.0e-07 58.5 121 35.5
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 4.0e-07 58.5 121 35.5
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 4.0e-07 58.5 115 35.7
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 5.2e-07 58.2 131 35.1
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 5.2e-07 58.2 132 34.8
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 8.9e-07 57.4 125 34.4
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 8.9e-07 57.4 125 34.4
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 8.9e-07 57.4 125 34.4
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 8.9e-07 57.4 125 34.4
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 8.9e-07 57.4 84 39.3
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 8.9e-07 57.4 127 33.1
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 8.9e-07 57.4 131 32.1
Lalb_Chr14g0362711 Lupinus albus HOM05D011327 ORTHO05D013488 1.2e-06 57.0 117 33.3
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 1.5e-06 56.6 126 34.9
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 1.5e-06 56.6 95 41.1
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 1.5e-06 56.6 120 33.3
TWI53G1424 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.5e-06 56.6 125 30.4
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 2.0e-06 56.2 137 33.6
Glyma.20G065500 Glycine max HOM05D011327 ORTHO05D013488 2.0e-06 56.2 119 36.1
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 2.0e-06 56.2 137 33.6
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 2.6e-06 55.8 127 33.9
THA.LOC104820654 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 2.6e-06 55.8 135 34.8
Phvul.008G290900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 3.4e-06 55.5 119 39.5
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 4.4e-06 55.1 118 33.9
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 4.4e-06 55.1 130 33.1
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 5.8e-06 54.7 118 33.9
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 5.8e-06 54.7 118 33.9
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 5.8e-06 54.7 129 34.9
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 7.6e-06 54.3 125 33.6
CsaV3_4G007460 Cucumis sativus L. HOM05D002924 ORTHO05D003122 7.6e-06 54.3 133 35.3
Sed0018194 Sechium edule HOM05D002924 ORTHO05D028993 7.6e-06 54.3 116 38.8
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 9.9e-06 53.9 117 35.9


User provided reference genes

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