Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30900 Coffea canephora HOM05D005123 ORTHO05D006532 8.0e-143 510.4 252 100.0
Oeu038460.1 Olea europaea HOM05D005123 ORTHO05D006532 5.8e-101 371.3 251 73.3
QL03p027727 Quercus lobata HOM05D005123 ORTHO05D006532 7.6e-101 370.9 251 72.1
SalBow4G1942 Salvia bowleyana HOM05D005123 ORTHO05D006532 2.2e-100 369.4 251 71.7
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 3.8e-100 368.6 242 75.6
Cfa006396 Carpinus fangiana HOM05D005123 ORTHO05D006532 1.1e-99 367.1 250 71.6
MBI11_g20622_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 1.2e-98 363.6 243 73.3
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 7.9e-98 360.9 249 70.7
MSTRG.5089 Avicennia marina HOM05D005123 ORTHO05D006532 1.8e-97 359.8 240 72.9
DCAR_006646 Daucus carota HOM05D005123 ORTHO05D006532 3.0e-97 359.0 245 71.8
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 3.3e-96 355.5 252 70.2
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 4.3e-96 355.1 244 73.0
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 9.6e-96 354.0 250 70.8
Duzib177G0775 Durio zibethinus HOM05D005123 ORTHO05D006532 1.3e-95 353.6 250 69.6
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 1.3e-95 353.6 247 71.7
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 2.1e-95 352.8 250 69.6
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 2.8e-95 352.4 252 69.8
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 6.2e-95 351.3 248 70.2
Rhsim07G0074600 Rhododendron simsii HOM05D005123 ORTHO05D006532 6.2e-95 351.3 250 70.4
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 8.1e-95 350.9 250 70.0
ECA232G3987 Erigeron canadensis HOM05D005123 ORTHO05D006532 1.8e-94 349.7 239 70.3
CsaV3_2G003960 Cucumis sativus L. HOM05D005123 ORTHO05D006532 2.4e-94 349.4 250 67.6
Psat0s169g0040 Pisum sativum HOM05D005123 ORTHO05D006532 3.1e-94 349.0 248 68.5
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 5.3e-94 348.2 234 73.1
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 9.0e-94 347.4 234 72.6
Thecc.05G280500 Theobroma cacao HOM05D005123 ORTHO05D006532 9.0e-94 347.4 250 69.2
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 1.2e-93 347.1 250 69.2
unitig_0.g2303 Utricularia gibba HOM05D005123 ORTHO05D006532 1.2e-93 347.1 248 67.3
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 1.5e-93 346.7 237 72.2
FvH4_4g17540 Fragaria vesca HOM05D005123 ORTHO05D006532 2.6e-93 345.9 234 72.6
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 2.6e-93 345.9 250 68.8
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 3.4e-93 345.5 250 66.8
Glyma.19G245900 Glycine max HOM05D005123 ORTHO05D006532 3.4e-93 345.5 248 70.2
Nn1g02615 Nelumbo nucifera HOM05D005123 ORTHO05D006532 3.4e-93 345.5 239 70.7
VMungo0540G0367 Vigna mungo HOM05D005123 ORTHO05D006532 3.4e-93 345.5 248 70.2
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 4.5e-93 345.1 250 68.4
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 4.5e-93 345.1 250 68.8
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 4.5e-93 345.1 248 69.0
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 9.9e-93 344.0 234 72.2
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 1.7e-92 343.2 235 71.5
Phvul.006G102800 Phaseolus vulgaris HOM05D005123 ORTHO05D006532 1.7e-92 343.2 248 70.2
TWI12G0989 Tripterygium wilfordii HOM05D005123 ORTHO05D006532 3.8e-92 342.0 240 69.6
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 4.9e-92 341.7 242 69.8
Nitab4.5_0002247g0060 Nicotiana tabacum HOM05D005123 ORTHO05D006532 4.9e-92 341.7 264 66.3
Sed0022916 Sechium edule HOM05D005123 ORTHO05D006532 6.4e-92 341.3 250 67.2
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 1.1e-91 340.5 248 68.1
Aqoxy5G00319 Aquilegia oxysepala HOM05D005123 ORTHO05D006532 1.4e-91 340.1 237 70.0
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 1.9e-91 339.7 250 68.4
Gohir.D08G232600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 3.2e-91 339.0 253 68.4
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 4.2e-91 338.6 248 68.5
CSS0014237 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 7.1e-91 337.8 236 70.8
CSS0032730 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 7.1e-91 337.8 236 70.8
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 9.3e-91 337.4 247 68.8
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 1.2e-90 337.0 239 68.2
COL.COLO4_15380 Corchorus olitorius HOM05D005123 ORTHO05D006532 1.2e-90 337.0 247 68.4
Gohir.A08G216000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.6e-90 336.7 253 68.0
arahy.Tifrunner.gnm1.ann1.9VED02 Arachis hypogaea HOM05D005123 ORTHO05D006532 3.5e-90 335.5 248 67.3
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 4.6e-90 335.1 250 68.4
Lsat_1_v5_gn_0_36021 Lactuca sativa HOM05D005123 ORTHO05D006532 4.6e-90 335.1 244 68.4
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 6.0e-90 334.7 244 67.2
Gorai.004G247100 Gossypium raimondii HOM05D005123 ORTHO05D006532 2.3e-89 332.8 253 67.6
Hund06950 Selenicereus undatus HOM05D005123 ORTHO05D006532 3.0e-89 332.4 249 68.3
HanXRQChr09g0259781 Helianthus annuus HOM05D005123 ORTHO05D006532 5.1e-89 331.6 251 66.5
Lj9C664G10 Lonicera japonica HOM05D005123 ORTHO05D006532 5.1e-89 331.6 231 71.4
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 6.7e-89 331.3 243 68.7
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 8.7e-89 330.9 249 66.7
Cpa.g.sc736.2 Carica papaya HOM05D005123 ORTHO05D006532 1.5e-88 330.1 248 65.3
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 1.6e-87 326.6 244 65.6
Manes.08G136400 Manihot esculenta HOM05D005123 ORTHO05D006532 2.1e-87 326.2 236 69.9
Gohir.D08G233000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 4.8e-87 325.1 253 66.0
Nitab4.5_0010168g0020 Nicotiana tabacum HOM05D005123 ORTHO05D006532 4.0e-86 322.0 287 59.9
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.7e-84 316.6 237 67.1
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 2.2e-84 316.2 237 64.1
EL10Ac4g09082 Beta vulgaris HOM05D005123 ORTHO05D006532 6.5e-84 314.7 241 65.1
Sc06g0003780 Simmondsia chinensis HOM05D005123 ORTHO05D006532 5.5e-83 311.6 234 67.1
AUR62001056 Chenopodium quinoa HOM05D005123 ORTHO05D006532 1.6e-82 310.1 240 64.2
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 3.5e-82 308.9 239 66.1
Aa31LG5G15060 Aethionema arabicum HOM05D005123 ORTHO05D006532 3.5e-82 308.9 248 62.5
Zm00001eb030960 Zea mays HOM05D005123 ORTHO05D006532 7.9e-82 307.8 236 62.3
AUR62004896 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.3e-81 306.2 240 63.3
AT3G04650 Arabidopsis thaliana HOM05D005123 ORTHO05D006532 6.7e-81 304.7 247 61.9
BcaC01g04358 Brassica carinata HOM05D005123 ORTHO05D006532 2.5e-80 302.8 247 61.9
C03p41060 Brassica napus HOM05D005123 ORTHO05D006532 2.5e-80 302.8 247 61.9
BolC3t16395H Brassica oleracea HOM05D005123 ORTHO05D006532 2.5e-80 302.8 247 61.9
HPP92_026486 Vanilla planifolia HOM05D005123 ORTHO05D006532 2.5e-80 302.8 241 63.5
AL3G14690 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 7.4e-80 301.2 247 60.7
BcaB04g19310 Brassica carinata HOM05D005123 ORTHO05D006532 7.4e-80 301.2 247 61.5
Carub.0003s0381 Capsella rubella HOM05D005123 ORTHO05D006532 7.4e-80 301.2 247 61.1
A03p33760 Brassica napus HOM05D005123 ORTHO05D006532 1.6e-79 300.1 247 60.7
BraA03t12549Z Brassica rapa HOM05D005123 ORTHO05D006532 1.6e-79 300.1 247 60.7
vmacro13816 Vaccinium macrocarpon HOM05D005123 ORTHO05D006532 2.8e-79 299.3 256 64.1
CARHR078850 Cardamine hirsuta HOM05D005123 ORTHO05D006532 6.3e-79 298.1 247 59.9
Thhalv10020605m.g Eutrema salsugineum HOM05D005123 ORTHO05D006532 6.3e-79 298.1 247 59.9
HPP92_014225 Vanilla planifolia HOM05D005123 ORTHO05D006532 1.4e-78 297.0 241 62.7
Sp3g03490 Schrenkiella parvula HOM05D005123 ORTHO05D006532 1.8e-78 296.6 247 60.7
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 2.0e-77 293.1 254 60.2
Gorai.004G247500 Gossypium raimondii HOM05D005123 ORTHO05D006532 3.4e-77 292.4 236 63.6
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 6.1e-74 281.6 187 70.6
Pp3c3_15330 Physcomitrium patens HOM05D005123 ORTHO05D006532 3.0e-73 279.3 232 60.3
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 1.1e-72 277.3 232 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 9.1e-70 267.7 238 55.9
SMO367G1262 Selaginella moellendorffii HOM05D005123 ORTHO05D006532 7.7e-69 264.6 233 55.4
MELO3C004395.2 Cucumis melo HOM05D005123 ORTHO05D006532 3.2e-59 232.6 170 66.5
ClCG02G016790 Citrullus lanatus HOM05D005123 ORTHO05D006532 2.1e-58 229.9 178 64.0
CBR_g26324 Chara braunii HOM05D005123 ORTHO05D006532 2.6e-56 223.0 270 47.4
Haze_04379 Corylus avellana HOM05D005123 ORTHO05D006532 8.2e-55 218.0 155 69.0
SalBow4G0099 Salvia bowleyana HOM05D005123 ORTHO05D006532 1.2e-53 214.2 145 69.7
Gohir.D02G179700 Gossypium hirsutum HOM05D005123 ORTHO05D006532 6.1e-50 201.8 139 71.2
Cre03.g207150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D006532 2.0e-48 196.8 241 44.0
CiPaw.08G122100 Carya illinoinensis HOM05D005123 ORTHO05D006532 4.5e-45 185.7 136 65.4
AUR62044106 Chenopodium quinoa HOM05D005123 ORTHO05D006532 1.3e-44 184.1 238 46.6
CiPaw.08G122000 Carya illinoinensis HOM05D005123 ORTHO05D006532 4.1e-38 162.5 98 81.6
Glyma.03G247900 Glycine max HOM05D005123 ORTHO05D006532 2.8e-34 149.8 120 63.3
Ciclev10029649m.g Citrus clementina HOM05D005123 ORTHO05D006532 7.5e-32 141.7 111 65.8
Medtr1g106590 Medicago truncatula HOM05D005123 ORTHO05D006532 5.6e-27 125.6 90 63.3
Ciclev10029972m.g Citrus clementina HOM05D005123 ORTHO05D006532 1.0e-25 121.3 102 62.7
MCO15G267 Micromonas commoda HOM05D005123 ORTHO05D006532 1.8e-25 120.6 178 39.9
Nitab4.5_0004275g0030 Nicotiana tabacum HOM05D006218 ORTHO05D007338 4.1e-22 109.4 97 56.7
PRCOL_00004966 Prasinoderma coloniale HOM05D005123 ORTHO05D006532 1.2e-21 107.8 187 38.5
Ciclev10029835m.g Citrus clementina HOM05D005123 ORTHO05D006532 3.0e-20 103.2 114 53.5
C05p55240 Brassica napus HOM05D005123 ORTHO05D006532 5.2e-17 92.4 69 66.7
BolC3t16228H Brassica oleracea HOM05D005123 ORTHO05D002627 1.2e-16 91.3 75 61.3
Nitab4.5_0003027g0090 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.5e-16 90.9 97 50.5
AL248U10010 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 8.1e-10 68.6 117 38.5
AagrBONN_evm.TU.Sc2ySwM_362.372 Anthoceros agrestis HOM05D006828 ORTHO05D008312 3.1e-09 66.6 188 26.6
CSS0004598 Camellia sinensis var. sinensis HOM05D006828 ORTHO05D008312 4.4e-08 62.8 176 27.3
Gohir.A07G068900 Gossypium hirsutum HOM05D005123 ORTHO05D006532 2.2e-07 60.5 62 54.8
Mapoly0153s0014 Marchantia polymorpha HOM05D006828 ORTHO05D008312 5.4e-06 55.8 187 24.6
GSVIVG01020458001 Vitis vinifera HOM05D006828 ORTHO05D008312 5.4e-06 55.8 185 25.4


User provided reference genes

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