Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 0.0e+00 1427.2 867 100.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.5e-156 557.8 892 44.5
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.0e-156 557.4 847 50.9
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 9.8e-156 555.1 871 45.7
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 9.8e-156 555.1 847 49.8
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.1e-151 541.6 910 45.1
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 5.2e-149 532.7 913 42.4
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.7e-147 527.7 932 43.6
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.9e-147 526.2 883 46.5
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.4e-146 523.9 938 42.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.1e-143 515.0 909 45.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 2.1e-142 510.8 850 47.3
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.1e-141 506.9 943 43.4
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.1e-141 506.9 878 50.7
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.5e-140 504.6 888 48.1
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.0e-140 504.2 886 47.9
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 6.4e-139 499.2 885 42.7
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.7e-137 493.8 856 44.6
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 8.6e-136 488.8 911 40.9
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 2.1e-134 484.2 914 46.6
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 3.1e-133 480.3 887 43.1
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 8.9e-133 478.8 819 48.8
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 4.4e-132 476.5 881 44.5
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.4e-130 470.7 891 41.9
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.5e-129 466.8 996 39.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 7.8e-129 465.7 878 40.7
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.9e-128 463.4 871 44.1
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 3.6e-126 456.8 885 41.9
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 3.7e-123 446.8 903 39.8
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 7.1e-122 442.6 871 42.1
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.7e-121 440.7 855 42.3
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 2.7e-121 440.7 790 44.4
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.0e-120 438.7 991 36.0
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 4.7e-118 429.9 865 43.8
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.7e-115 421.4 880 45.5
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 2.9e-115 420.6 913 42.2
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 3.8e-115 420.2 1061 37.7
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 4.9e-115 419.9 935 39.3
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.4e-114 417.5 701 42.1
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 4.2e-114 416.8 823 46.9
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.6e-113 414.8 935 38.9
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 3.5e-113 413.7 876 40.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 4.6e-113 413.3 528 49.4
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 7.8e-113 412.5 913 43.8
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.3e-112 411.8 803 41.8
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 3.0e-112 410.6 538 48.9
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 6.6e-112 409.5 733 42.4
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.6e-112 409.5 913 43.9
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.6e-112 409.5 913 44.0
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.5e-111 408.3 804 41.7
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.3e-111 406.8 893 38.3
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.6e-110 404.8 871 39.6
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.1e-109 400.6 814 40.5
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 6.9e-109 399.4 846 40.8
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.2e-108 398.7 915 41.2
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 3.4e-108 397.1 392 58.2
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 3.4e-108 397.1 842 39.8
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 7.6e-108 396.0 419 56.3
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.3e-107 395.2 546 47.3
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.7e-107 394.8 514 50.4
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.8e-107 393.7 419 54.2
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.9e-107 393.3 454 52.0
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 4.9e-107 393.3 461 51.8
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.2e-105 388.7 820 40.2
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.1e-105 387.9 884 41.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 4.6e-105 386.7 829 36.3
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.0e-104 385.6 847 41.1
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.0e-104 385.6 533 48.4
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 3.0e-104 384.0 421 55.3
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.1e-103 382.1 853 39.9
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 4.3e-103 380.2 430 52.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.1e-98 365.5 845 39.9
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 5.5e-98 363.2 357 57.4
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.2e-97 362.1 888 37.5
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 6.0e-97 359.8 417 51.3
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.3e-96 357.8 544 46.1
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.8e-94 350.1 442 50.2
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 8.1e-94 349.4 426 51.6
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 3.4e-92 344.0 445 48.3
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 5.8e-92 343.2 434 49.1
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.2e-91 341.3 434 48.4
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 2.5e-90 337.8 413 50.1
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 3.5e-89 334.0 431 50.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.5e-89 334.0 761 36.4
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.0e-88 332.4 573 40.5
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.7e-86 323.9 431 49.0
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.1e-85 320.5 430 48.6
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.2e-84 318.9 356 52.5
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.3e-83 315.5 439 47.4
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 4.6e-81 307.0 431 47.6
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.3e-79 300.8 404 47.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 2.8e-78 297.7 409 49.9
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.5e-76 292.0 480 44.0
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 8.5e-75 286.2 774 37.3
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.6e-73 282.0 473 44.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.8e-54 218.0 694 31.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.8e-54 218.0 694 31.1
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.8e-48 198.7 323 43.3
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.2e-41 176.0 151 62.9
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.6e-41 175.6 668 34.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.4e-37 161.8 400 35.2
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.3e-35 156.0 360 38.6
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 4.0e-32 144.4 309 37.2
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 5.0e-27 127.5 199 44.2
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 2.3e-24 118.6 130 51.5
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 5.8e-23 114.0 164 43.9
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.0e-19 100.9 607 37.2
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.8e-17 95.1 288 38.2
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 3.1e-16 91.7 131 48.1
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 3.4e-15 88.2 182 45.1
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.5e-10 72.0 331 35.6
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.6e-09 69.3 133 44.4
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.6e-09 69.3 52 73.1
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.2e-07 63.2 40 70.0
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.2e-07 63.2 102 44.1
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.6e-07 62.0 43 65.1
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.4e-07 61.6 474 25.5
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.9e-06 57.8 44 56.8


User provided reference genes

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