Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 2.7e-62 241.9 129 100.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 3.0e-53 211.8 127 85.8
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.1e-52 209.9 129 85.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 84.3
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 4.4e-52 208.0 129 84.5
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 4.4e-52 208.0 127 85.0
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.3e-51 206.5 129 83.7
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.3e-51 206.5 129 83.7
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.3e-51 206.5 129 84.5
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.7e-51 206.1 129 82.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 83.7
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 82.9
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 3.7e-51 204.9 128 83.6
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.7e-51 204.9 129 82.2
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 4.8e-51 204.5 129 84.5
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 6.3e-51 204.1 125 84.8
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.3e-51 204.1 127 83.5
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 6.3e-51 204.1 129 83.7
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 83.7
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.1e-50 203.4 129 82.9
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.1e-50 203.4 129 82.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 1.1e-50 203.4 128 83.6
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 82.7
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.4e-50 203.0 125 84.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 82.2
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 82.9
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 82.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 82.2
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 82.2
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 2.4e-50 202.2 129 82.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 81.4
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 82.9
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 82.9
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 82.2
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.2
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 7.0e-50 200.7 129 82.2
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 9.1e-50 200.3 129 81.4
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.2e-49 199.9 122 83.6
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.2e-49 199.9 129 82.2
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.2e-49 199.9 129 82.9
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 81.4
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 80.6
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 82.2
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 81.4
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 81.4
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.0e-49 199.1 122 82.8
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 80.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 82.2
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 81.4
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 4.5e-49 198.0 129 81.4
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 5.9e-49 197.6 129 81.4
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.0e-48 196.8 129 79.8
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.0e-48 196.8 129 80.6
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.3e-48 196.4 129 80.6
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 79.8
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 79.8
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 79.8
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.9e-48 195.3 129 78.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 2.9e-48 195.3 129 80.6
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 3.8e-48 194.9 128 80.5
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.0e-48 194.5 129 79.1
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 5.0e-48 194.5 129 79.8
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 6.5e-48 194.1 129 79.1
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 8.5e-48 193.7 122 82.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 8.5e-48 193.7 129 79.1
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.5e-47 193.0 129 79.1
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.5e-47 193.0 129 80.6
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 2.5e-47 192.2 129 76.7
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 2.5e-47 192.2 129 78.3
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 3.2e-47 191.8 129 78.3
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 4.2e-47 191.4 129 79.1
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.2e-47 191.4 129 80.6
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 4.2e-47 191.4 129 76.7
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 5.5e-47 191.0 128 78.9
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 5.5e-47 191.0 129 76.7
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 9.4e-47 190.3 122 78.7
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.2e-46 189.9 129 76.7
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.1e-46 189.1 129 76.7
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-46 188.7 128 77.3
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 3.6e-46 188.3 131 77.1
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 3.6e-46 188.3 123 78.9
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 4.7e-46 188.0 127 77.2
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.4e-45 186.4 129 77.5
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.4e-45 186.4 129 76.7
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.8e-45 186.0 129 74.4
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.0e-45 184.9 129 76.7
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 5.2e-45 184.5 129 76.0
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 6.7e-45 184.1 127 74.8
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 8.8e-45 183.7 131 75.6
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 8.8e-45 183.7 131 75.6
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 8.8e-45 183.7 127 74.8
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.2e-44 183.3 131 74.0
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.2e-44 183.3 131 74.8
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.2e-44 183.3 129 74.4
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.5e-44 183.0 130 75.4
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 75.6
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 3.3e-44 181.8 129 74.4
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.3e-43 179.9 130 74.6
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 1.7e-43 179.5 118 78.0
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.7e-43 179.5 118 79.7
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 2.2e-43 179.1 129 75.2
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 3.7e-43 178.3 118 77.1
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.5e-41 171.8 129 72.9
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 1.3e-40 169.9 152 63.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.2e-39 164.9 129 68.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 5.5e-39 164.5 129 69.8
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 5.5e-39 164.5 129 69.8
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 3.6e-38 161.8 129 69.0
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 8.0e-38 160.6 129 68.2
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.8e-37 159.5 154 60.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.5e-36 156.4 129 62.8
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 2.0e-36 156.0 129 65.9
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.7e-35 152.9 129 63.6
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 2.2e-35 152.5 129 65.1
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 8.6e-32 140.6 106 73.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.5e-31 139.8 129 58.9
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.5e-31 139.8 122 59.0
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 3.6e-30 135.2 129 59.7
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 2.3e-29 132.5 87 78.2
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 8.8e-29 130.6 85 76.5
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.2e-28 130.2 87 77.0
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.7e-27 126.3 129 55.8
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.2e-25 120.2 87 71.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.6e-25 119.8 130 50.8
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.2e-19 99.4 121 43.8
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 3.2e-18 95.5 121 45.5
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 5.9e-17 91.3 121 44.6
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.2e-14 83.6 61 68.9
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 2.0e-12 76.3 46 82.6
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 3.5e-09 65.5 50 68.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.8e-09 64.3 35 85.7
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 3.9e-08 62.0 42 76.2
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.9e-07 59.7 40 72.5
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.8e-06 55.8 31 80.6


User provided reference genes

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