Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 6.9e-201 703.7 353 100.0
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 3.9e-119 432.2 351 65.0
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 1.8e-116 423.3 346 64.2
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.5e-115 420.2 342 64.0
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 9.9e-115 417.5 353 62.6
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 2.1e-112 409.8 351 63.8
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 8.7e-111 404.4 351 60.7
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 2.5e-110 402.9 351 60.7
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 1.6e-109 400.2 351 60.4
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 3.6e-109 399.1 356 62.6
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.9e-102 376.7 348 58.0
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 2.5e-102 376.3 345 60.6
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 7.4e-102 374.8 352 60.8
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 2.1e-101 373.2 361 57.1
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 2.1e-101 373.2 347 60.2
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 8.2e-101 371.3 353 59.8
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 2.4e-100 369.8 361 57.6
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 3.1e-100 369.4 355 58.0
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 6.9e-100 368.2 350 59.1
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 7.6e-99 364.8 350 57.7
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.3e-98 364.0 340 59.7
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 1.7e-98 363.6 344 60.5
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 2.2e-98 363.2 344 59.0
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 2.5e-97 359.8 353 57.5
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 5.5e-97 358.6 348 58.9
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 7.1e-97 358.2 357 54.9
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 2.1e-96 356.7 358 55.0
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 2.3e-95 353.2 342 55.6
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 2.3e-95 353.2 342 55.6
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.3e-95 353.2 366 56.3
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 5.1e-95 352.1 356 55.3
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 8.7e-95 351.3 360 54.4
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 1.1e-94 350.9 358 56.7
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 1.1e-94 350.9 341 56.6
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 1.5e-94 350.5 358 54.7
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 5.7e-94 348.6 361 56.5
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 5.7e-94 348.6 347 54.8
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 9.6e-94 347.8 357 52.9
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 9.6e-94 347.8 361 56.0
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 3.7e-93 345.9 354 53.7
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 8.2e-93 344.7 357 55.7
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 8.2e-93 344.7 351 56.4
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 8.2e-93 344.7 358 54.2
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.8e-92 343.6 332 54.5
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 5.3e-92 342.0 411 49.1
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 1.5e-91 340.5 349 55.9
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 7.6e-91 338.2 362 54.4
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 1.3e-90 337.4 344 56.4
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 2.9e-90 336.3 362 53.6
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 5.0e-90 335.5 343 53.4
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 5.0e-90 335.5 354 53.7
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 5.0e-90 335.5 347 53.3
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 8.5e-90 334.7 340 54.4
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.7e-88 329.7 309 60.5
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 3.6e-88 329.3 362 53.3
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 4.6e-88 328.9 345 54.5
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 3.9e-87 325.9 342 53.8
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.3e-86 322.4 352 52.0
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 5.7e-86 322.0 352 53.4
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 9.7e-86 321.2 360 51.7
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 1.6e-85 320.5 344 52.3
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 6.9e-84 315.1 359 51.3
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 4.5e-83 312.4 339 52.2
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 2.9e-82 309.7 359 52.4
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 8.5e-82 308.1 359 50.7
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 9.4e-81 304.7 376 46.8
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 1.6e-80 303.9 334 51.8
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 3.6e-80 302.8 359 50.4
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 1.5e-78 297.4 334 50.9
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.3e-78 296.2 402 48.0
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 3.3e-78 296.2 266 61.3
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 5.7e-78 295.4 339 47.2
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 3.7e-77 292.7 323 50.2
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.1e-76 291.2 347 48.4
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 9.1e-76 288.1 339 46.3
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 4.5e-75 285.8 338 48.5
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 1.0e-74 284.6 331 48.9
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 1.4e-73 280.8 331 48.6
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 2.5e-73 280.0 340 47.4
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 4.7e-72 275.8 331 47.7
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.4e-71 274.2 345 45.5
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 1.8e-71 273.9 245 63.3
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 1.5e-70 270.8 331 47.7
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 2.6e-70 270.0 327 46.8
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 4.4e-70 269.2 331 48.0
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 5.7e-70 268.9 346 45.7
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 5.7e-70 268.9 358 46.4
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 9.7e-70 268.1 327 47.1
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 9.7e-70 268.1 347 46.7
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 2.8e-69 266.5 332 47.0
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 4.8e-69 265.8 352 49.4
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 6.3e-69 265.4 331 47.1
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 8.2e-69 265.0 218 59.6
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 1.8e-68 263.8 331 46.8
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 2.6e-67 260.0 331 46.5
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 1.3e-66 257.7 251 59.4
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 1.5e-65 254.2 291 50.2
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 1.6e-64 250.8 164 78.0
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 4.7e-64 249.2 324 46.6
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 6.1e-64 248.8 336 47.0
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 1.1e-60 238.0 338 45.9
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 2.4e-60 236.9 343 42.3
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 9.1e-60 235.0 323 43.7
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 8.8e-55 218.4 321 41.7
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 4.5e-51 206.1 206 57.8
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 4.5e-51 206.1 259 52.1
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.7e-50 204.1 169 59.2
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.2e-44 181.8 242 45.9
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 1.0e-42 178.3 145 62.8
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 3.8e-42 176.4 349 32.7
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 4.7e-40 169.5 264 37.5
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 4.0e-39 166.4 330 33.3
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 9.8e-38 161.8 181 42.5
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 5.4e-36 156.0 311 30.5
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 6.0e-35 152.5 122 61.5
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 6.6e-34 149.1 112 66.1
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 1.3e-29 134.8 84 72.6
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 6.4e-29 132.5 201 36.8
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 5.6e-25 119.4 94 61.7
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 8.6e-18 95.5 110 50.9
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.1e-17 95.1 65 64.6
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 1.5e-17 94.7 228 26.3
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.5e-17 94.7 85 49.4
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 2.4e-15 87.4 99 49.5
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.4e-12 77.4 67 56.7
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 3.2e-12 77.0 123 42.3
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 4.1e-12 76.6 240 32.1
PGSC0003DMG400035925 Solanum tuberosum HOM05D005152 ORTHO05D006162 2.1e-11 74.3 109 42.2
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 2.7e-11 73.9 98 43.9
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 5.6e-09 66.2 63 57.1
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 1.6e-08 64.7 102 42.2
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 2.1e-08 64.3 59 55.9
CBR_g41105 Chara braunii HOM05D001740 ORTHO05D001468 3.6e-08 63.5 148 31.1
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 6.2e-08 62.8 100 41.0
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.2e-07 59.7 78 43.6
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 1.2e-06 58.5 108 39.8


User provided reference genes

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