Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 3.9e-64 248.1 131 100.0
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-19 100.1 68 79.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-19 100.1 68 79.4
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.2e-17 93.6 68 72.1
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 7.9e-17 90.9 70 67.1
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 7.9e-17 90.9 68 69.1
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 7.9e-17 90.9 68 69.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.0e-16 90.5 68 67.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.0e-16 90.5 68 72.1
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-16 90.1 68 69.1
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.8e-16 89.7 68 67.6
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.3e-16 89.4 68 67.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 3.9e-16 88.6 68 67.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 3.9e-16 88.6 68 66.2
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 3.9e-16 88.6 71 67.6
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 5.1e-16 88.2 68 66.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 5.1e-16 88.2 68 67.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.1e-16 88.2 68 69.1
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 6.7e-16 87.8 68 67.6
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 6.7e-16 87.8 68 67.6
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 69.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 67.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 8.7e-16 87.4 67 67.2
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 8.7e-16 87.4 68 66.2
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.1e-15 87.0 75 61.3
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.1e-15 87.0 68 69.1
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-15 87.0 67 65.7
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.5e-15 86.7 75 61.3
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.5e-15 86.7 68 67.6
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.5e-15 86.7 68 66.2
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.5e-15 86.7 68 66.2
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.5e-15 86.7 68 66.2
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.9e-15 86.3 68 67.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.5e-15 85.9 68 66.2
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.5e-15 85.9 68 64.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.5e-15 85.9 68 66.2
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.5e-15 85.9 68 67.6
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.3e-15 85.5 68 64.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 3.3e-15 85.5 68 64.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.3e-15 85.5 68 64.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 4.3e-15 85.1 68 64.7
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 4.3e-15 85.1 68 64.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 4.3e-15 85.1 68 64.7
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 5.7e-15 84.7 68 64.7
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 7.4e-15 84.3 68 66.2
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 7.4e-15 84.3 68 66.2
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 7.4e-15 84.3 67 64.2
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 7.4e-15 84.3 68 63.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.4e-15 84.3 68 64.7
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 9.6e-15 84.0 68 61.8
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 9.6e-15 84.0 68 63.2
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 9.6e-15 84.0 68 64.7
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 9.6e-15 84.0 67 61.2
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 9.6e-15 84.0 68 63.2
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 9.6e-15 84.0 75 57.3
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 9.6e-15 84.0 68 61.8
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.3e-14 83.6 68 63.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.3e-14 83.6 68 61.8
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-14 83.6 75 57.3
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-14 83.6 75 57.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.3e-14 83.6 75 56.0
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 63.2
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 63.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 60.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 60.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 64.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 64.7
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 2.1e-14 82.8 68 64.7
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 60.3
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 63.2
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 63.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 61.8
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 61.8
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.8e-14 82.4 68 61.8
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.7e-14 82.0 68 61.8
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.8e-14 81.6 68 63.2
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.8e-14 81.6 68 60.3
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.3e-14 81.3 64 62.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 6.3e-14 81.3 68 61.8
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.2e-14 80.9 68 60.3
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-13 80.5 67 59.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.1e-13 80.5 68 58.8
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.1e-13 80.5 68 57.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.4e-13 80.1 68 58.8
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.4e-13 80.1 68 60.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.4e-13 79.3 68 58.8
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.1e-13 79.0 68 60.3
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 5.3e-13 78.2 68 57.4
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 5.3e-13 78.2 73 63.0
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 5.3e-13 78.2 68 55.9
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 6.9e-13 77.8 68 58.8
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 9.0e-13 77.4 68 57.4
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 9.0e-13 77.4 68 57.4
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.2e-12 77.0 68 55.9
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-12 76.3 68 54.4
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-12 76.3 68 54.4
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.0e-12 76.3 70 54.3
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.6e-12 75.9 68 54.4
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.4e-12 75.5 68 54.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 5.9e-12 74.7 68 57.4
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.9e-12 74.7 68 57.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.9e-12 74.7 68 57.4
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.9e-12 74.7 68 57.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 5.9e-12 74.7 68 57.4
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.9e-11 72.4 70 52.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.5e-10 68.2 67 53.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.5e-10 68.2 68 51.5
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 7.2e-10 67.8 51 64.7
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.7e-09 65.9 67 52.2
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.7e-09 65.9 68 51.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.6e-09 65.1 68 48.5
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.3e-06 57.0 63 47.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-06 57.0 69 46.4


User provided reference genes

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