Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 0.0e+00 1691.0 874 100.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 0.0e+00 1401.0 821 89.5
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 0.0e+00 1140.9 796 79.1
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.0e-261 907.1 883 58.0
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.4e-250 869.4 882 55.7
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-250 869.0 885 55.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.1e-242 844.0 883 53.7
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.3e-236 822.4 880 51.5
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.6e-235 820.1 915 52.9
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.7e-235 818.9 896 51.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.7e-235 818.9 899 50.5
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 3.7e-235 818.9 880 51.4
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 6.9e-234 814.7 913 50.7
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.5e-231 806.2 888 52.6
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.8e-229 800.0 948 49.2
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.9e-228 796.6 706 58.8
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.4e-226 790.4 908 50.9
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.4e-226 790.4 909 49.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.5e-225 786.9 902 51.4
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.8e-224 782.3 904 50.6
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 5.0e-216 755.4 886 50.3
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 7.2e-215 751.5 888 49.9
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.6e-209 733.0 792 52.3
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.5e-207 726.5 889 46.6
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.5e-207 726.5 905 48.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.2e-206 724.2 892 48.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 6.1e-206 721.8 892 48.8
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.0e-205 719.5 896 48.4
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.7e-203 712.6 888 48.4
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 4.1e-202 709.1 890 48.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.6e-201 706.4 877 48.1
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 5.9e-201 705.3 884 46.9
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 7.7e-201 704.9 888 48.6
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.7e-200 703.7 886 46.5
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 8.5e-200 701.4 888 46.7
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 7.2e-199 698.4 892 46.7
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 7.2e-199 698.4 882 48.8
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.1e-198 696.8 892 46.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.6e-198 696.0 899 47.7
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-197 694.1 880 47.0
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 4.0e-197 692.6 878 48.9
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.6e-196 689.9 880 46.9
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.8e-195 686.4 892 47.1
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 6.3e-195 685.3 879 46.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-194 684.1 879 47.1
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.0e-192 675.6 890 44.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-191 674.1 889 45.4
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.6e-190 670.6 890 46.0
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 3.6e-190 669.5 939 44.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.3e-189 666.8 882 45.1
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 5.2e-189 665.6 893 44.8
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.5e-188 664.1 883 46.4
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.4e-188 662.5 920 47.1
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 5.7e-188 662.1 889 46.2
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.3e-187 661.0 353 98.6
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.7e-187 659.4 891 44.3
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.4e-186 656.8 880 44.9
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 5.9e-185 652.1 883 45.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-184 651.0 793 48.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.5e-183 646.7 892 44.1
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 4.2e-183 646.0 771 47.7
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 7.2e-183 645.2 880 44.4
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 9.5e-183 644.8 884 44.7
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 4.0e-181 639.4 783 47.4
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 5.2e-181 639.0 755 47.8
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.4e-180 636.3 804 46.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 6.3e-179 632.1 884 44.2
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.1e-178 629.8 745 48.5
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.0e-178 628.6 724 48.3
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.3e-176 624.4 880 43.5
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.6e-174 617.5 715 49.8
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 6.8e-173 612.1 885 42.4
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.7e-171 606.3 537 59.6
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 5.4e-170 602.4 891 42.3
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 7.0e-170 602.1 804 44.7
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 1.2e-169 601.3 841 44.1
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.6e-169 599.4 934 42.1
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 6.6e-168 595.5 709 48.7
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 4.3e-167 592.8 900 42.3
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 3.1e-165 586.6 706 47.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 4.0e-165 586.3 883 42.4
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 4.0e-165 586.3 892 41.5
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-164 583.2 715 47.1
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 9.8e-164 581.6 708 46.8
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.7e-163 579.7 621 50.2
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 6.4e-163 578.9 715 46.9
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 6.4e-163 578.9 717 47.4
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 3.2e-162 576.6 715 46.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 7.0e-162 575.5 715 46.6
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 9.2e-162 575.1 716 46.9
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.7e-160 570.9 810 43.3
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.7e-160 570.9 796 44.3
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.9e-160 569.7 738 49.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.9e-160 569.7 648 50.2
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 5.0e-160 569.3 659 48.3
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 3.3e-159 566.6 655 50.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-158 564.7 712 46.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.1e-158 563.9 712 46.6
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.1e-157 561.6 881 41.4
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 6.8e-157 558.9 798 43.1
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-156 557.8 709 46.0
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.3e-155 554.7 706 45.6
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.0e-152 545.0 955 39.5
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.7e-152 544.3 900 39.1
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 4.7e-150 536.2 831 39.8
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.0e-144 518.5 897 40.4
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 9.9e-140 501.9 608 47.5
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.8e-137 492.3 652 45.2
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.2e-121 441.8 669 40.2
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.9e-121 439.1 647 41.4
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.3e-120 437.6 647 41.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-116 424.5 556 45.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-116 424.5 556 45.1
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.8e-116 422.9 744 36.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 7.6e-116 422.5 663 43.4
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.3e-110 405.2 637 40.8
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.8e-110 403.3 790 36.5
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 7.7e-108 396.0 713 36.9
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.4e-106 391.7 524 45.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 6.1e-105 386.3 608 44.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.7e-102 378.3 444 47.5
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.3e-101 373.2 337 59.1
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.6e-100 370.9 647 40.2
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.3e-99 368.6 673 36.0
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.3e-99 368.6 673 36.0
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.5e-99 366.3 647 40.2
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 5.9e-84 316.6 756 31.6
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.8e-83 313.9 174 90.8
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.6e-81 308.5 274 54.0
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.8e-78 297.0 821 30.1
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 4.5e-76 290.4 248 58.9
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 8.8e-72 276.2 803 30.5
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.2e-70 271.6 507 42.0
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 2.0e-68 265.0 297 49.2
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.6e-59 233.0 427 37.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 7.3e-58 229.9 543 35.2
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.4e-55 220.7 224 50.4
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.9e-53 215.3 343 38.8
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 9.5e-50 203.0 142 65.5
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.4e-45 187.2 370 40.0
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.7e-43 182.2 197 51.3
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 2.3e-43 181.8 142 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.9e-43 181.0 345 36.8
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.1e-43 180.6 154 59.1
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.6e-43 180.3 360 39.4
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.6e-43 180.3 223 46.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 5.2e-40 170.6 120 65.0
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.4e-37 162.5 428 33.6
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.6e-36 159.1 246 39.4
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-34 152.9 168 48.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.6e-33 149.1 516 31.2
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.8e-33 148.3 117 60.7
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 1.4e-32 146.0 121 57.9
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.2e-31 142.9 169 47.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-28 132.9 232 39.2
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 4.3e-26 124.4 102 58.8
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 4.3e-26 124.4 102 58.8
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 9.6e-26 123.2 235 37.0
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-24 117.9 182 41.8
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-23 116.3 115 52.2
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.4e-23 114.4 297 35.7
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.7e-22 112.5 133 45.9
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 6.4e-22 110.5 292 32.2
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 2.4e-21 108.6 89 62.9
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.3e-19 102.8 90 55.6
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.3e-19 102.1 84 56.0
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 3.0e-19 101.7 126 42.1
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 1.5e-18 99.4 84 54.8
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.9e-18 99.0 182 41.2
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-18 98.2 84 54.8
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 3.3e-18 98.2 84 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 7.3e-18 97.1 129 39.5
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 6.2e-17 94.0 90 53.3
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 2.0e-15 89.0 74 56.8
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 4.5e-15 87.8 74 55.4
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 5.8e-15 87.4 612 20.9
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.9e-14 85.1 75 60.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.4e-13 82.0 66 54.5
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 4.2e-13 81.3 65 56.9
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-11 75.1 56 60.7
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 5.1e-11 74.3 273 29.3
MSTRG.18917 Avicennia marina HOM05D003594 ORTHO05D026973 1.3e-09 69.7 94 46.8
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.6e-09 69.3 60 55.0
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 1.1e-08 66.6 184 36.4
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.4e-08 65.5 62 56.5
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 2.6e-07 62.0 44 61.4
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 1.0e-06 60.1 110 40.0


User provided reference genes

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