Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 5.6e-77 290.8 142 100.0
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 3.0e-54 215.3 129 82.9
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 8.2e-44 180.6 131 65.6
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 8.2e-44 180.6 131 65.6
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 9.1e-43 177.2 131 62.6
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 2.6e-42 175.6 131 63.4
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.4e-40 169.9 129 63.6
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 3.2e-40 168.7 132 59.8
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.2e-40 168.7 129 59.7
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.2e-40 168.7 129 59.7
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 3.2e-40 168.7 129 59.7
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.2e-39 166.8 131 59.5
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.1e-39 166.0 131 61.1
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 3.6e-39 165.2 131 58.8
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 4.7e-39 164.9 131 59.5
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 7.9e-39 164.1 129 58.1
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 7.9e-39 164.1 127 62.2
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 7.9e-39 164.1 131 58.0
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.0e-38 163.7 131 58.8
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.0e-38 162.2 131 57.3
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 3.9e-38 161.8 131 56.5
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 2.6e-37 159.1 131 56.5
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 3.3e-37 158.7 151 54.3
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 7.4e-37 157.5 131 56.5
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.3e-36 156.8 131 55.7
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.3e-36 156.8 146 52.7
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.3e-36 156.8 131 55.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.3e-36 156.8 152 54.6
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 2.2e-36 156.0 131 55.0
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.7e-36 155.2 131 55.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.7e-36 155.2 129 56.6
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.7e-36 155.2 129 55.8
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 3.7e-36 155.2 146 52.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 3.7e-36 155.2 129 57.4
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.8e-36 154.8 131 55.0
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 6.3e-36 154.5 131 55.7
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.1e-35 153.7 131 55.7
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.8e-35 152.9 129 54.3
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 3.1e-35 152.1 131 54.2
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 4.1e-35 151.8 131 55.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 5.3e-35 151.4 131 53.4
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 5.3e-35 151.4 131 55.0
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 7.0e-35 151.0 130 55.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 9.1e-35 150.6 129 55.8
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.6e-34 149.8 131 51.1
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.6e-34 149.8 127 56.7
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 2.0e-34 149.4 131 54.2
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 2.0e-34 149.4 131 54.2
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.6e-34 149.1 131 52.7
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.6e-34 149.1 131 54.2
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.6e-34 149.1 131 51.9
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.6e-34 149.1 131 55.0
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 3.5e-34 148.7 131 53.4
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 5.9e-34 147.9 129 55.0
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 5.9e-34 147.9 129 55.0
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.0e-33 147.1 129 53.5
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.0e-33 147.1 129 53.5
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.3e-33 146.7 131 52.7
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.3e-33 146.7 131 53.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.3e-33 146.7 129 53.5
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.7e-33 146.4 131 51.9
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.2e-33 146.0 131 51.9
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.2e-33 146.0 131 51.9
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 2.2e-33 146.0 132 54.5
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.2e-33 146.0 131 53.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.2e-33 146.0 131 54.2
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.9e-33 145.6 128 53.9
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 2.9e-33 145.6 129 51.9
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 3.8e-33 145.2 131 51.1
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 3.8e-33 145.2 125 53.6
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 5.0e-33 144.8 131 49.6
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 8.5e-33 144.1 131 51.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 8.5e-33 144.1 131 52.7
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.5e-32 143.3 131 51.1
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 3.2e-32 142.1 130 50.8
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 3.2e-32 142.1 131 51.9
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 9.4e-32 140.6 129 52.7
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 4.7e-31 138.3 146 47.3
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 4.7e-31 138.3 125 52.0
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.4e-30 136.7 146 46.6
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.3e-30 136.0 120 53.3
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 5.2e-30 134.8 131 46.6
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.0e-29 132.9 130 49.2
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 4.4e-29 131.7 131 48.1
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 5.7e-29 131.3 126 49.2
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 5.7e-29 131.3 132 46.2
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 7.5e-29 131.0 132 49.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 3.7e-28 128.6 127 49.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.1e-27 124.0 132 46.2
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.5e-26 122.1 138 47.8
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 3.6e-23 112.1 137 46.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.0e-22 108.6 123 43.1
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.4e-19 100.1 120 44.2
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 7.0e-19 97.8 80 53.8
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.2e-18 97.1 113 41.6
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 2.0e-18 96.3 122 42.6
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 8.6e-17 90.9 132 46.2
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.1e-16 90.5 68 58.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.2e-15 87.0 123 35.0
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 2.8e-15 85.9 65 61.5
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 5.7e-13 78.2 66 54.5
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.9e-12 75.1 119 35.3
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.8e-11 73.2 119 34.5
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 2.4e-11 72.8 63 52.4
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 3.1e-11 72.4 85 43.5
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-09 67.4 109 36.7


User provided reference genes

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