Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 3.4e-167 591.7 311 100.0
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 1.6e-71 273.9 304 51.3
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 4.5e-71 272.3 313 47.9
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.6e-70 268.5 312 51.0
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 2.8e-68 263.1 315 46.0
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 4.0e-67 259.2 314 47.1
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 5.2e-67 258.8 314 46.8
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 6.8e-67 258.5 304 48.4
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 7.5e-66 255.0 324 46.9
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.1e-64 251.1 311 44.4
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 1.4e-64 250.8 312 44.2
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 1.8e-64 250.4 314 43.9
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 5.4e-64 248.8 319 46.1
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.2e-63 247.7 314 45.2
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.2e-63 247.7 295 45.4
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.2e-63 247.7 295 45.4
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 5.9e-63 245.4 311 46.3
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.0e-62 244.6 331 42.9
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 5.0e-62 242.3 292 46.2
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 8.6e-62 241.5 311 46.0
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.2e-60 237.7 308 44.8
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 2.8e-60 236.5 316 43.7
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 4.7e-60 235.7 313 42.5
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 8.0e-60 235.0 315 44.4
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 3.1e-59 233.0 299 43.5
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 5.2e-59 232.3 315 43.8
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 4.4e-58 229.2 317 42.3
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 5.8e-58 228.8 313 43.1
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.7e-57 227.3 309 43.4
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 2.2e-57 226.9 308 46.8
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.2e-57 226.9 317 42.0
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 8.3e-57 224.9 302 44.0
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.1e-56 224.6 285 43.9
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 5.4e-56 222.2 319 44.5
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 2.7e-55 219.9 319 42.3
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 3.5e-55 219.5 318 40.9
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.5e-55 219.5 319 40.8
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.5e-55 219.5 318 40.9
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.3e-54 217.6 315 44.1
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.7e-54 217.2 312 42.6
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 2.3e-54 216.9 308 43.2
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 3.0e-54 216.5 318 41.8
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 8.6e-54 214.9 308 42.5
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.1e-53 214.5 316 40.5
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.9e-53 213.8 313 41.2
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 4.3e-53 212.6 325 40.6
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 2.1e-52 210.3 303 43.6
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 4.7e-52 209.1 322 40.7
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 4.7e-52 209.1 285 43.9
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 6.2e-52 208.8 287 43.6
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 6.8e-51 205.3 317 39.1
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 2.0e-50 203.8 314 38.9
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 9.8e-50 201.4 315 41.6
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 1.7e-49 200.7 343 37.0
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 2.2e-49 200.3 329 38.0
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 2.9e-49 199.9 310 41.6
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 8.3e-49 198.4 314 42.0
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 1.1e-48 198.0 310 39.4
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 1.9e-48 197.2 308 37.3
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.9e-48 197.2 292 41.8
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 2.4e-48 196.8 316 39.9
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 2.4e-48 196.8 311 39.2
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 2.4e-48 196.8 263 41.4
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 4.1e-48 196.1 316 40.8
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 7.1e-48 195.3 311 40.8
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 9.2e-48 194.9 284 40.5
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.2e-47 194.5 316 38.6
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.6e-47 194.1 316 39.2
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 1.6e-47 194.1 281 40.2
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 2.1e-47 193.7 285 40.0
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 6.0e-47 192.2 315 38.4
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.3e-46 191.0 317 39.1
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 1.7e-46 190.7 309 39.2
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 6.6e-46 188.7 282 40.8
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 1.1e-45 188.0 286 42.3
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.6e-44 184.1 279 41.9
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.1e-43 181.4 302 41.1
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 1.8e-43 180.6 312 36.2
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.2e-43 179.1 231 42.4
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 3.4e-42 176.4 294 39.1
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.4e-40 171.0 300 37.3
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.9e-40 170.6 323 35.3
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 2.4e-40 170.2 317 34.1
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.3e-38 164.5 318 35.5
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 1.3e-38 164.5 302 35.8
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.9e-37 160.6 302 36.4
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.9e-37 160.6 307 36.2
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 3.3e-37 159.8 225 44.0
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 2.8e-36 156.8 312 36.5
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.4e-35 154.5 313 35.8
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.8e-35 154.1 307 36.5
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 4.0e-35 152.9 307 36.2
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.6e-34 150.2 314 35.0
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.4e-34 149.8 302 34.4
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 4.4e-34 149.4 297 36.4
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 2.4e-32 143.7 308 34.1
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.6e-28 131.0 344 33.4
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.6e-28 131.0 319 31.3
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 5.3e-27 125.9 310 32.6
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 1.2e-26 124.8 232 37.1
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.9e-25 119.4 129 42.6
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 6.0e-23 112.5 155 41.9
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 3.6e-20 103.2 108 46.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 3.6e-20 103.2 108 46.3
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 3.5e-15 86.7 82 54.9
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.8e-14 84.3 280 26.1
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 2.8e-12 77.0 126 41.3
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 6.9e-11 72.4 300 22.3
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 2.0e-10 70.9 303 25.7
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 7.6e-10 68.9 303 25.7
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 1.7e-09 67.8 313 21.1
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 6.5e-09 65.9 304 24.7
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 1.9e-08 64.3 299 23.4
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 3.2e-08 63.5 300 21.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 3.2e-08 63.5 300 21.7
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 3.2e-08 63.5 300 21.7
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 5.5e-08 62.8 300 21.7
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 5.5e-08 62.8 309 21.0
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 7.1e-08 62.4 297 21.9
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 7.1e-08 62.4 297 21.5
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 7.1e-08 62.4 317 22.7
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 9.3e-08 62.0 300 21.7
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 9.3e-08 62.0 307 24.1
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 9.3e-08 62.0 296 21.3
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 1.6e-07 61.2 303 21.8
TPR.G22299 Trifolium pratense HOM05D002440 ORTHO05D002576 1.6e-07 61.2 305 24.6
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 2.1e-07 60.8 303 23.1
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 2.7e-07 60.5 303 24.4
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 2.7e-07 60.5 317 22.4
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 2.7e-07 60.5 329 24.6
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 4.6e-07 59.7 297 21.5
VMungo1383G0515 Vigna mungo HOM05D002440 ORTHO05D002576 4.6e-07 59.7 303 23.8
Nitab4.5_0012555g0020 Nicotiana tabacum HOM05D002440 ORTHO05D002576 7.9e-07 58.9 311 23.8
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 1.3e-06 58.2 305 23.0
Nitab4.5_0022593g0010 Nicotiana tabacum HOM05D002440 ORTHO05D002576 1.3e-06 58.2 311 23.8
Oeu018967.1 Olea europaea HOM05D002440 ORTHO05D002576 1.3e-06 58.2 304 22.4
Atru.chr5.544 Acer truncatum HOM05D002440 ORTHO05D002576 1.8e-06 57.8 314 24.5
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 1.8e-06 57.8 299 22.7
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 1.8e-06 57.8 126 33.3
Medtr7g078700 Medicago truncatula HOM05D002440 ORTHO05D002576 2.3e-06 57.4 303 23.4
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 3.0e-06 57.0 94 31.9
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 3.0e-06 57.0 304 22.7
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 3.9e-06 56.6 298 22.1
Haze_15547 Corylus avellana HOM05D002440 ORTHO05D002576 3.9e-06 56.6 307 22.8
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 3.9e-06 56.6 306 24.8
Sp4g28140 Schrenkiella parvula HOM05D002440 ORTHO05D002576 3.9e-06 56.6 308 22.7
AL4G45310 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 5.1e-06 56.2 308 21.8
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 5.1e-06 56.2 285 22.8
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 5.1e-06 56.2 124 29.0
Peaxi162Scf00020g00113 Petunia axillaris HOM05D002440 ORTHO05D002576 5.1e-06 56.2 311 23.5
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 6.7e-06 55.8 290 22.8
Thhalv10001526m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 8.7e-06 55.5 312 23.1
MBI04_g31951_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 8.7e-06 55.5 114 28.1
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 8.7e-06 55.5 309 22.3
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 8.7e-06 55.5 315 23.8


User provided reference genes

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