Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28880 Coffea canephora HOM05D007659 ORTHO05D009227 2.2e-58 228.8 117 100.0
Cc00_g30920 Coffea canephora HOM05D007659 ORTHO05D009227 1.2e-56 223.0 116 97.4
Manes.06G031900 Manihot esculenta HOM05D007659 ORTHO05D009227 3.6e-29 131.7 98 67.3
QL02p094226 Quercus lobata HOM05D007659 ORTHO05D009227 1.4e-28 129.8 102 64.7
Peaxi162Scf00038g00725 Petunia axillaris HOM05D007659 ORTHO05D009227 2.3e-28 129.0 113 61.1
CANSAT11G2634 Cannabis sativa HOM05D007659 ORTHO05D009227 7.5e-27 124.0 106 65.1
Eucgr.C02516 Eucalyptus grandis HOM05D007659 ORTHO05D009227 1.7e-26 122.9 101 64.4
Hund07205 Selenicereus undatus HOM05D007659 ORTHO05D009227 6.4e-26 120.9 96 65.6
Cfa019408 Carpinus fangiana HOM05D007659 ORTHO05D009227 8.3e-26 120.6 116 56.9
Sabra06G0137200 Salix brachista HOM05D007659 ORTHO05D009227 8.3e-26 120.6 126 55.6
Eucgr.L01549 Eucalyptus grandis HOM05D007659 ORTHO05D009227 1.4e-25 119.8 101 63.4
RcHm_v2.0_Chr4g0405451 Rosa chinensis HOM05D007659 ORTHO05D009227 1.4e-25 119.8 91 70.3
MD12G1196500 Malus domestica HOM05D007659 ORTHO05D009227 2.4e-25 119.0 96 65.6
Haze_19124 Corylus avellana HOM05D007659 ORTHO05D009227 5.4e-25 117.9 88 67.0
Dinv41341 Davidia involucrata HOM05D007659 ORTHO05D009227 5.4e-25 117.9 85 69.4
FvH4_4g09760 Fragaria vesca HOM05D007659 ORTHO05D009227 5.4e-25 117.9 91 67.0
Hma1.2p1_1084F.1_g255330 Hydrangea macrophylla HOM05D007659 ORTHO05D009227 7.0e-25 117.5 86 69.8
TWI63G1302 Tripterygium wilfordii HOM05D007659 ORTHO05D009227 7.0e-25 117.5 88 67.0
Actinidia28561 Actinidia chinensis HOM05D007659 ORTHO05D009227 9.2e-25 117.1 91 68.1
Duzib187G1272 Durio zibethinus HOM05D007659 ORTHO05D009227 9.2e-25 117.1 86 68.6
FAN22G0789 Fragaria x ananassa HOM05D007659 ORTHO05D009227 9.2e-25 117.1 91 67.0
GSVIVG01023691001 Vitis vinifera HOM05D007659 ORTHO05D009227 9.2e-25 117.1 102 62.7
PGSC0003DMG400011214 Solanum tuberosum HOM05D007659 ORTHO05D009227 1.6e-24 116.3 94 61.7
arahy.Tifrunner.gnm1.ann1.FWLQ6H Arachis hypogaea HOM05D007659 ORTHO05D009227 2.0e-24 115.9 93 63.4
arahy.Tifrunner.gnm1.ann1.KUG4GU Arachis hypogaea HOM05D007659 ORTHO05D009227 2.0e-24 115.9 93 63.4
Haze_19128 Corylus avellana HOM05D007659 ORTHO05D009227 2.0e-24 115.9 88 67.0
Haze_19136 Corylus avellana HOM05D007659 ORTHO05D009227 2.0e-24 115.9 88 67.0
Rhsim01G0023600 Rhododendron simsii HOM05D007659 ORTHO05D009227 2.0e-24 115.9 94 69.1
Thecc.09G154300 Theobroma cacao HOM05D007659 ORTHO05D009227 2.0e-24 115.9 87 66.7
Prupe.1G101900 Prunus persica HOM05D007659 ORTHO05D009227 3.5e-24 115.2 90 67.8
BcaNung02735 Brassica carinata HOM05D007659 ORTHO05D009227 4.6e-24 114.8 87 65.5
FAN07G1615 Fragaria x ananassa HOM05D007659 ORTHO05D009227 4.6e-24 114.8 91 65.9
AT4G30845 Arabidopsis thaliana HOM05D007659 ORTHO05D009227 6.0e-24 114.4 87 64.4
Haze_19129 Corylus avellana HOM05D007659 ORTHO05D009227 6.0e-24 114.4 88 65.9
Aqoxy7G03300 Aquilegia oxysepala HOM05D007659 ORTHO05D009227 1.0e-23 113.6 87 67.8
Haze_27708 Corylus avellana HOM05D007659 ORTHO05D009227 1.0e-23 113.6 86 67.4
EL10Ac4g09658 Beta vulgaris HOM05D007659 ORTHO05D009227 1.3e-23 113.2 94 60.6
A03p60380 Brassica napus HOM05D007659 ORTHO05D009227 1.7e-23 112.8 87 63.2
BraA03t15078Z Brassica rapa HOM05D007659 ORTHO05D009227 1.7e-23 112.8 87 63.2
CARHR238720 Cardamine hirsuta HOM05D007659 ORTHO05D009227 1.7e-23 112.8 117 53.0
Solyc07g006040.3 Solanum lycopersicum HOM05D007659 ORTHO05D009227 1.7e-23 112.8 124 50.0
C07p58250 Brassica napus HOM05D007659 ORTHO05D009227 2.3e-23 112.5 87 63.2
BolC7t46283H Brassica oleracea HOM05D007659 ORTHO05D009227 2.3e-23 112.5 87 63.2
Ciclev10009916m.g Citrus clementina HOM05D007659 ORTHO05D009227 3.0e-23 112.1 91 61.5
Medtr4g130250 Medicago truncatula HOM05D007659 ORTHO05D009227 3.9e-23 111.7 98 58.2
AL7G21270 Arabidopsis lyrata HOM05D007659 ORTHO05D009227 6.6e-23 110.9 87 63.2
VMungo1215G2964 Vigna mungo HOM05D007659 ORTHO05D009227 8.6e-23 110.5 88 61.4
Haze_19127 Corylus avellana HOM05D007659 ORTHO05D009227 1.1e-22 110.2 88 64.8
Thhalv10026581m.g Eutrema salsugineum HOM05D007659 ORTHO05D009227 1.5e-22 109.8 113 54.9
Phvul.003G153300 Phaseolus vulgaris HOM05D007659 ORTHO05D009227 1.5e-22 109.8 88 59.1
BcaNung01556 Brassica carinata HOM05D007659 ORTHO05D009227 2.5e-22 109.0 114 53.5
Nn8g40114 Nelumbo nucifera HOM05D007659 ORTHO05D009227 2.5e-22 109.0 93 62.4
Haze_19130 Corylus avellana HOM05D007659 ORTHO05D009227 3.3e-22 108.6 86 66.3
Haze_19137 Corylus avellana HOM05D007659 ORTHO05D009227 4.3e-22 108.2 81 67.9
Carub.0007s0971 Capsella rubella HOM05D007659 ORTHO05D009227 5.6e-22 107.8 119 54.6
MSTRG.6163 Avicennia marina HOM05D007659 ORTHO05D009227 7.3e-22 107.5 108 58.3
PGR102G1560 Punica granatum HOM05D007659 ORTHO05D009227 9.5e-22 107.1 90 60.0
vmacro13049 Vaccinium macrocarpon HOM05D007659 ORTHO05D009227 9.5e-22 107.1 105 60.0
Lalb_Chr12g0198851 Lupinus albus HOM05D007659 ORTHO05D009227 2.1e-21 105.9 86 61.6
Aa31LG2G19540 Aethionema arabicum HOM05D007659 ORTHO05D009227 3.6e-21 105.1 84 63.1
Gohir.A04G040700 Gossypium hirsutum HOM05D007659 ORTHO05D009227 3.6e-21 105.1 101 54.5
Gohir.D05G342500 Gossypium hirsutum HOM05D007659 ORTHO05D009227 3.6e-21 105.1 89 56.2
Glyma.17G071000 Glycine max HOM05D007659 ORTHO05D009227 4.7e-21 104.8 116 48.3
Gorai.009G368800 Gossypium raimondii HOM05D007659 ORTHO05D009227 6.2e-21 104.4 71 66.2
HanXRQChr03g0066011 Helianthus annuus HOM05D007659 ORTHO05D009227 6.2e-21 104.4 108 54.6
Ca_21156_v3 Cicer arietinum L. HOM05D007659 ORTHO05D009227 1.8e-20 102.8 98 54.1
Sc06g0005340 Simmondsia chinensis HOM05D007659 ORTHO05D009227 4.0e-20 101.7 86 65.1
THA.LOC104803555 Tarenaya hassleriana HOM05D007659 ORTHO05D009227 4.0e-20 101.7 121 50.4
Cfa020779 Carpinus fangiana HOM05D001390 ORTHO05D001522 5.2e-20 101.3 87 60.9
Lj4g0008058 Lotus japonicus HOM05D007659 ORTHO05D009227 6.8e-20 100.9 106 55.7
Psat4g010200 Pisum sativum HOM05D007659 ORTHO05D009227 6.8e-20 100.9 86 59.3
unitig_736.g22510 Utricularia gibba HOM05D007659 ORTHO05D009227 1.2e-19 100.1 114 50.9
Migut.J01394 Erythranthe guttata HOM05D007659 ORTHO05D009227 2.0e-19 99.4 83 63.9
TPR.G24875 Trifolium pratense HOM05D007659 ORTHO05D009227 2.0e-19 99.4 74 62.2
CiPaw.15G164100 Carya illinoinensis HOM05D007659 ORTHO05D009227 3.4e-19 98.6 75 66.7
Lsat_1_v5_gn_7_50920 Lactuca sativa HOM05D007659 ORTHO05D009227 4.4e-19 98.2 111 49.5
SalBow6G0978 Salvia bowleyana HOM05D007659 ORTHO05D009227 5.8e-19 97.8 82 64.6
Sed0026034 Sechium edule HOM05D007659 ORTHO05D009227 5.8e-19 97.8 85 58.8
MELO3C010198.2 Cucumis melo HOM05D007659 ORTHO05D009227 9.8e-19 97.1 89 52.8
ClCG06G012660 Citrullus lanatus HOM05D007659 ORTHO05D009227 1.3e-18 96.7 68 61.8
PSO782G2453 Papaver somniferum HOM05D007659 ORTHO05D009227 2.9e-18 95.5 62 74.2
CsaV3_1G029210 Cucumis sativus L. HOM05D007659 ORTHO05D009227 3.7e-18 95.1 82 54.9
PSO063G0802 Papaver somniferum HOM05D007659 ORTHO05D009227 3.7e-18 95.1 72 69.4
Ah.06g188510 Amaranthus hybridus HOM05D000987 ORTHO05D000831 4.9e-18 94.7 71 67.6
CDE04G0159 Ceratophyllum demersum HOM05D007659 ORTHO05D009227 1.1e-17 93.6 101 43.6
Nitab4.5_0016001g0010 Nicotiana tabacum HOM05D007659 ORTHO05D009227 2.4e-17 92.4 62 72.6
HPP92_006698 Vanilla planifolia HOM05D007659 ORTHO05D009227 4.1e-17 91.7 71 57.7
Potri.006G180200 Populus trichocarpa HOM05D007659 ORTHO05D009227 9.2e-17 90.5 161 41.0
ATR0111G019 Amborella trichopoda HOM05D007659 ORTHO05D009227 2.7e-16 89.0 61 68.9
MD04G1182900 Malus domestica HOM05D007659 ORTHO05D009227 6.0e-16 87.8 54 79.6
Zm00001eb400430 Zea mays HOM05D007659 ORTHO05D009227 2.5e-14 82.4 65 56.9
Os03g0210900 Oryza sativa ssp. japonica HOM05D007659 ORTHO05D009227 2.8e-13 79.0 57 63.2
Mapoly0004s0134 Marchantia polymorpha HOM05D007659 ORTHO05D009227 4.9e-10 68.2 89 48.3
CBR_g10976 Chara braunii HOM05D007659 ORTHO05D009227 1.1e-09 67.0 83 43.4
Pp3c17_8590 Physcomitrium patens HOM05D007659 ORTHO05D009227 1.2e-08 63.5 89 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2308 Anthoceros agrestis HOM05D007659 ORTHO05D009227 1.1e-06 57.0 94 37.2


User provided reference genes

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