Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 4.4e-105 384.8 216 100.0
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 4.9e-72 275.0 198 77.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.3e-34 148.7 205 54.6
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-32 144.1 207 54.1
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.9e-32 142.9 197 52.3
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.1e-31 141.0 195 54.4
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.4e-31 140.6 204 50.5
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.9e-31 140.2 195 52.8
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 9.3e-31 137.9 208 51.0
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.2e-30 137.5 195 52.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.6e-30 137.1 200 56.0
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.6e-30 137.1 208 50.5
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.6e-30 137.1 201 51.2
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 6.0e-30 135.2 198 51.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.0e-29 134.4 194 49.5
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.3e-29 133.3 207 49.3
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.0e-29 132.9 152 53.9
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.0e-29 132.9 199 53.3
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.9e-29 132.5 202 56.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.5e-28 130.6 136 58.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.5e-28 130.6 118 63.6
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.5e-28 130.6 136 57.4
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.9e-28 130.2 138 58.7
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.9e-28 130.2 192 53.6
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.9e-28 130.2 211 45.5
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.3e-28 129.4 131 58.0
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.3e-28 129.4 140 55.0
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 7.4e-28 128.3 214 46.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 9.6e-28 127.9 138 57.2
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.8e-27 126.3 136 55.1
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 3.6e-27 125.9 134 56.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 6.2e-27 125.2 126 59.5
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.2e-27 125.2 207 52.7
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 8.1e-27 124.8 178 50.6
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.4e-26 124.0 194 50.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.8e-26 123.6 138 58.7
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 3.1e-26 122.9 138 54.3
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 4.0e-26 122.5 139 55.4
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 5.3e-26 122.1 138 55.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 9.0e-26 121.3 144 56.9
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.5e-25 120.6 139 55.4
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.5e-25 120.6 138 53.6
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.0e-25 120.2 129 54.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.0e-25 120.2 190 50.0
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.6e-25 119.8 139 55.4
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.6e-25 119.8 136 53.7
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.4e-25 119.4 203 50.2
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 4.5e-25 119.0 139 52.5
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 4.5e-25 119.0 105 61.0
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 4.5e-25 119.0 197 45.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 5.8e-25 118.6 222 50.0
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 5.8e-25 118.6 136 56.6
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 5.8e-25 118.6 133 51.9
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 9.9e-25 117.9 135 55.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 9.9e-25 117.9 125 57.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.7e-24 117.1 139 55.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.2e-24 116.7 142 52.8
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 2.2e-24 116.7 146 52.1
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.9e-24 116.3 198 44.4
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 2.9e-24 116.3 130 54.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.9e-24 116.3 150 50.0
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.8e-24 115.9 139 51.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.9e-24 115.5 133 54.9
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.9e-24 115.5 139 51.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.4e-24 115.2 144 54.9
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 6.4e-24 115.2 198 44.4
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 6.4e-24 115.2 138 53.6
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 6.4e-24 115.2 141 48.2
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 8.4e-24 114.8 155 56.8
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 8.4e-24 114.8 143 53.1
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 8.4e-24 114.8 137 51.8
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 8.4e-24 114.8 137 52.6
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 8.4e-24 114.8 128 53.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.1e-23 114.4 96 62.5
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.1e-23 114.4 137 52.6
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.4e-23 114.0 132 52.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.4e-23 114.0 139 53.2
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.9e-23 113.6 86 70.9
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.4e-23 113.2 136 54.4
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.4e-23 113.2 139 51.1
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.2e-23 112.8 130 53.8
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.2e-23 112.8 131 53.4
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 5.5e-23 112.1 139 54.7
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.5e-23 112.1 136 53.7
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 5.5e-23 112.1 142 62.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.5e-23 112.1 140 51.4
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 9.3e-23 111.3 139 53.2
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 9.3e-23 111.3 136 52.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.2e-22 110.9 81 74.1
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 4.6e-22 109.0 199 47.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 6.0e-22 108.6 138 50.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 7.9e-22 108.2 120 57.5
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.0e-21 107.8 194 50.5
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.0e-21 107.8 197 47.2
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.3e-21 107.5 71 74.6
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.8e-21 107.1 140 51.4
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.8e-21 107.1 139 47.5
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 1.8e-21 107.1 207 44.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.3e-21 106.7 200 50.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.9e-21 105.9 140 51.4
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 5.1e-21 105.5 118 54.2
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 6.7e-21 105.1 135 48.1
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.5e-20 104.0 193 48.2
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.9e-20 103.6 195 46.2
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.5e-20 103.2 136 47.8
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.3e-20 102.8 140 50.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.3e-20 102.8 74 70.3
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 5.6e-20 102.1 132 47.0
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.4e-20 101.7 150 49.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.3e-19 100.9 135 44.4
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.7e-19 99.4 78 69.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 8.1e-19 98.2 128 50.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 2.4e-18 96.7 146 53.4
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 4.0e-18 95.9 151 43.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 4.0e-18 95.9 151 43.7
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-17 94.4 124 45.2
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-17 94.0 85 60.0
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 2.0e-17 93.6 146 43.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 4.5e-17 92.4 85 57.6
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 5.8e-17 92.0 131 46.6
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 5.8e-17 92.0 131 46.6
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 5.8e-17 92.0 131 46.6
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 7.6e-17 91.7 124 44.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.0e-16 91.3 141 44.7
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.2e-16 90.1 197 37.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.9e-16 89.7 141 44.0
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.9e-16 89.0 63 69.8
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 8.4e-16 88.2 85 55.3
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.1e-15 87.8 202 39.6
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.1e-15 87.8 202 39.6
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.9e-15 87.0 84 56.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 3.2e-15 86.3 82 56.1
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.2e-15 86.3 82 56.1
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.2e-15 86.3 82 56.1
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 4.2e-15 85.9 202 39.1
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 5.5e-15 85.5 61 75.4
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 7.1e-15 85.1 82 56.1
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.6e-14 84.0 187 39.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.0e-14 82.0 61 70.5
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.9e-13 79.3 141 42.6
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.5e-12 77.4 157 40.1
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.4e-12 75.1 53 73.6
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.3e-11 72.0 67 59.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.1e-10 71.2 46 76.1
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-10 70.9 52 73.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.5e-09 67.4 53 66.0
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.0e-09 67.0 76 51.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.6e-09 66.6 125 41.6
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.8e-08 62.8 111 49.5
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.1e-07 61.2 81 48.1
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 1.2e-06 57.8 72 47.2


User provided reference genes

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