Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 1.2e-64 249.6 118 100.0
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 2.0e-51 205.7 118 83.9
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 1.6e-48 196.1 121 74.4
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 2.3e-47 192.2 120 74.2
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 3.9e-47 191.4 125 71.2
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 5.0e-47 191.0 118 73.7
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 6.6e-47 190.7 125 71.2
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 8.6e-47 190.3 117 75.2
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 1.1e-46 189.9 114 76.3
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 1.5e-46 189.5 124 74.2
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 1.9e-46 189.1 121 73.6
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 3.3e-46 188.3 127 70.1
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 4.3e-46 188.0 127 70.1
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 7.3e-46 187.2 127 70.1
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 7.3e-46 187.2 117 74.4
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 7.3e-46 187.2 125 71.2
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 9.5e-46 186.8 121 71.1
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 1.6e-45 186.0 120 70.8
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 2.1e-45 185.7 120 72.5
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 3.6e-45 184.9 125 70.4
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 4.7e-45 184.5 114 74.6
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 6.2e-45 184.1 124 70.2
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 8.1e-45 183.7 112 72.3
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 1.4e-44 183.0 126 69.8
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 1.4e-44 183.0 121 69.4
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 1.8e-44 182.6 118 72.0
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 2.3e-44 182.2 121 70.2
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 2.3e-44 182.2 121 71.9
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 2.3e-44 182.2 118 71.2
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 2.3e-44 182.2 121 71.9
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 3.1e-44 181.8 125 68.8
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 4.0e-44 181.4 121 69.4
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 4.0e-44 181.4 121 69.4
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 4.0e-44 181.4 125 67.2
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 6.8e-44 180.6 125 68.0
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 8.9e-44 180.3 120 71.7
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 1.5e-43 179.5 121 67.8
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 1.5e-43 179.5 122 68.0
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 1.5e-43 179.5 121 67.8
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 2.0e-43 179.1 120 68.3
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 2.0e-43 179.1 120 68.3
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 2.0e-43 179.1 119 71.4
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 2.6e-43 178.7 121 70.2
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 2.6e-43 178.7 120 69.2
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 3.4e-43 178.3 114 71.1
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 3.4e-43 178.3 121 68.6
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 4.4e-43 177.9 121 70.2
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 4.4e-43 177.9 121 70.2
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 4.4e-43 177.9 120 70.0
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 4.4e-43 177.9 118 72.9
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 5.8e-43 177.6 125 66.4
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 5.8e-43 177.6 121 68.6
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 5.8e-43 177.6 120 68.3
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 7.5e-43 177.2 115 68.7
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 7.5e-43 177.2 124 67.7
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 7.5e-43 177.2 121 69.4
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 9.8e-43 176.8 122 68.0
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 1.3e-42 176.4 121 66.9
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.3e-42 176.4 120 69.2
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 1.3e-42 176.4 123 67.5
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 1.3e-42 176.4 118 71.2
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.7e-42 176.0 121 69.4
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 1.7e-42 176.0 121 69.4
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.7e-42 176.0 118 70.3
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 2.2e-42 175.6 121 66.1
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 2.2e-42 175.6 123 66.7
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 2.9e-42 175.3 136 64.0
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.7e-42 174.9 120 67.5
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.7e-42 174.9 120 68.3
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.7e-42 174.9 121 71.1
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 3.7e-42 174.9 123 65.9
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 3.7e-42 174.9 115 72.2
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 4.9e-42 174.5 127 65.4
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.9e-42 174.5 120 67.5
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 6.4e-42 174.1 124 67.7
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 6.4e-42 174.1 121 64.5
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 1.1e-41 173.3 122 66.4
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.1e-41 173.3 124 69.4
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 1.1e-41 173.3 121 69.4
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 1.1e-41 173.3 120 67.5
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 1.4e-41 172.9 121 67.8
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 1.4e-41 172.9 123 65.9
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.4e-41 172.9 124 64.5
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.9e-41 172.6 117 69.2
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 3.2e-41 171.8 124 66.9
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 5.4e-41 171.0 118 69.5
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 9.2e-41 170.2 121 65.3
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 9.2e-41 170.2 122 65.6
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.6e-40 169.5 121 64.5
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 2.1e-40 169.1 112 68.8
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 2.7e-40 168.7 114 71.1
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 2.7e-40 168.7 114 70.2
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 2.7e-40 168.7 120 65.0
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 6.0e-40 167.5 205 45.4
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 7.8e-40 167.2 123 63.4
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 7.8e-40 167.2 116 66.4
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 1.0e-39 166.8 122 63.9
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 1.0e-39 166.8 113 70.8
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.3e-39 166.4 117 65.0
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.7e-39 166.0 112 67.9
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 2.3e-39 165.6 113 69.9
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 3.0e-39 165.2 113 67.3
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 3.0e-39 165.2 114 68.4
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 3.0e-39 165.2 114 70.2
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 3.9e-39 164.9 109 72.5
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-39 164.5 120 64.2
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 6.6e-39 164.1 118 64.4
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 6.6e-39 164.1 114 64.0
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 8.6e-39 163.7 117 64.1
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 4.3e-38 161.4 114 68.4
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 9.5e-38 160.2 114 66.7
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 1.4e-36 156.4 133 56.4
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 3.1e-36 155.2 118 63.6
arahy.Tifrunner.gnm1.ann1.SNS3QW Arachis hypogaea HOM05D003832 ORTHO05D004365 6.8e-36 154.1 102 69.6
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.2e-35 153.3 121 58.7
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 3.4e-35 151.8 126 54.0
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 7.6e-35 150.6 126 60.3
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 9.9e-35 150.2 124 57.3
BolC9t57639H Brassica oleracea HOM05D003832 ORTHO05D004365 2.2e-34 149.1 126 59.5
SGA_v2.0_scaffold14G07081 Striga asiatica HOM05D003832 ORTHO05D004365 5.4e-33 144.4 126 57.1
C07p18790 Brassica napus HOM05D003832 ORTHO05D004365 1.2e-32 143.3 111 62.2
BolC7t42388H Brassica oleracea HOM05D003832 ORTHO05D004365 2.7e-32 142.1 119 58.8
EL10Ac4g09380 Beta vulgaris HOM05D003832 ORTHO05D004365 1.0e-31 140.2 115 56.5
EL10Ac4g09383 Beta vulgaris HOM05D003832 ORTHO05D004365 1.0e-31 140.2 115 56.5
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 1.3e-31 139.8 130 50.0
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 1.5e-30 136.3 71 83.1
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 1.5e-30 136.3 71 83.1
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.6e-29 131.7 97 63.9
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 1.1e-28 130.2 111 56.8
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 1.8e-28 129.4 71 80.3
Eucgr.E02175 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.9e-28 127.1 104 60.6
SGA_v2.0_scaffold231G43408 Striga asiatica HOM05D003832 ORTHO05D004365 8.9e-28 127.1 113 55.8
Haze_22022 Corylus avellana HOM05D003832 ORTHO05D004365 1.5e-27 126.3 72 79.2
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.5e-27 126.3 71 80.3
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 1.5e-27 126.3 71 73.2
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 9.9e-27 123.6 71 78.9
Eucgr.E02551 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.3e-26 123.2 71 77.5
C09p47960 Brassica napus HOM05D003832 ORTHO05D004365 2.2e-26 122.5 73 74.0
Cre12.g509600 Chlamydomonas reinhardtii HOM05D003832 ORTHO05D004365 2.9e-26 122.1 100 59.0
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 8.4e-26 120.6 105 58.1
A05p26850 Brassica napus HOM05D003832 ORTHO05D004365 1.9e-25 119.4 72 73.6
A07p42340 Brassica napus HOM05D003832 ORTHO05D004365 1.9e-25 119.4 72 73.6
BraA05t21564Z Brassica rapa HOM05D003832 ORTHO05D004365 1.9e-25 119.4 72 73.6
CDE07G0789 Ceratophyllum demersum HOM05D001368 ORTHO05D003846 1.9e-25 119.4 71 73.2
BraA05t20080Z Brassica rapa HOM05D003832 ORTHO05D004365 6.0e-24 114.4 72 72.2
PRCOL_00000145 Prasinoderma coloniale HOM05D003832 ORTHO05D004365 1.3e-23 113.2 137 46.0
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-23 111.3 71 70.4
CARHR289090 Cardamine hirsuta HOM05D003832 ORTHO05D004365 8.7e-23 110.5 83 62.7
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.5e-22 109.8 65 73.8
MCO05G158 Micromonas commoda HOM05D003832 ORTHO05D004365 1.9e-22 109.4 138 45.7
PSO832G0096 Papaver somniferum HOM05D003832 ORTHO05D004365 5.6e-22 107.8 71 69.0
Cfa026363 Carpinus fangiana HOM05D011254 ORTHO05D013441 9.6e-22 107.1 87 55.2
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.3e-20 101.3 123 45.5
EL10Ac4g09389 Beta vulgaris HOM05D003832 ORTHO05D004365 9.9e-19 97.1 115 43.5
Haze_26440 Corylus avellana HOM05D003832 ORTHO05D004365 1.0e-15 87.0 94 44.7
CSS0017606 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 1.3e-15 86.7 49 77.6
CSS0037914 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 1.3e-15 86.7 49 77.6
AUR62000790 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.8e-15 86.3 71 59.2
Eucgr.E02147 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-15 84.7 112 41.1
BcaC06g36546 Brassica carinata HOM05D003832 ORTHO05D004365 6.7e-15 84.3 86 52.3
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 6.7e-15 84.3 49 75.5
MD16G1248500 Malus domestica HOM05D003832 ORTHO05D004365 1.9e-14 82.8 65 58.5
Eucgr.E02296 Eucalyptus grandis HOM05D003832 ORTHO05D004365 6.2e-13 77.8 51 66.7
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.4e-12 75.9 48 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1832 Anthoceros agrestis HOM05D003832 ORTHO05D004365 7.1e-09 64.3 114 34.2
Eucgr.E02304 Eucalyptus grandis HOM05D003832 ORTHO05D004365 7.1e-09 64.3 47 59.6
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 1.6e-08 63.2 39 69.2
Eucgr.E02600 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.8e-07 59.7 47 59.6
Pp3s196_80 Physcomitrium patens HOM05D005486 ORTHO05D003297 1.1e-06 57.0 72 38.9
Cc02_g28300 Coffea canephora HOM05D003832 ORTHO05D153734 5.6e-06 54.7 30 86.7


User provided reference genes

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