Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28280 Coffea canephora HOM05D003832 ORTHO05D004365 2.5e-83 312.0 153 100.0
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 3.2e-17 92.4 179 36.9
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.2e-17 92.4 179 36.9
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 9.2e-17 90.9 176 39.2
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 9.2e-17 90.9 173 38.7
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.2e-16 90.5 64 68.8
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 2.7e-16 89.4 67 67.2
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 6.0e-16 88.2 64 68.8
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 6.0e-16 88.2 172 40.1
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 6.0e-16 88.2 64 68.8
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 7.8e-16 87.8 170 40.6
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 7.8e-16 87.8 170 37.6
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 1.7e-15 86.7 64 67.2
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 1.7e-15 86.7 64 67.2
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 1.7e-15 86.7 64 67.2
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 1.7e-15 86.7 162 38.3
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 2.3e-15 86.3 171 36.8
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 2.3e-15 86.3 67 67.2
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 2.3e-15 86.3 163 37.4
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 3.0e-15 85.9 58 74.1
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 3.0e-15 85.9 168 36.9
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 3.0e-15 85.9 57 73.7
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 3.0e-15 85.9 57 73.7
SGA_v2.0_scaffold231G43408 Striga asiatica HOM05D003832 ORTHO05D004365 3.9e-15 85.5 75 62.7
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 5.1e-15 85.1 172 40.1
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 5.1e-15 85.1 57 73.7
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 5.1e-15 85.1 58 70.7
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 5.1e-15 85.1 62 67.7
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 5.1e-15 85.1 62 69.4
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 6.6e-15 84.7 67 61.2
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 6.6e-15 84.7 64 67.2
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 8.6e-15 84.3 63 66.7
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 8.6e-15 84.3 58 72.4
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 8.6e-15 84.3 64 67.2
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.1e-14 84.0 171 37.4
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.1e-14 84.0 65 66.2
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 1.5e-14 83.6 172 37.8
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 1.5e-14 83.6 58 69.0
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-14 83.6 57 71.9
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 1.5e-14 83.6 62 64.5
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 1.5e-14 83.6 82 57.3
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 1.9e-14 83.2 63 65.1
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.9e-14 83.2 64 67.2
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 1.9e-14 83.2 69 60.9
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 1.9e-14 83.2 183 33.3
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 2.5e-14 82.8 172 39.5
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 2.5e-14 82.8 63 65.1
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 2.5e-14 82.8 57 73.7
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 2.5e-14 82.8 57 71.9
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 2.5e-14 82.8 68 61.8
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 3.3e-14 82.4 179 36.9
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 3.3e-14 82.4 58 70.7
CARHR037820 Cardamine hirsuta HOM05D003832 ORTHO05D004365 3.3e-14 82.4 64 62.5
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 3.3e-14 82.4 63 63.5
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.3e-14 82.4 57 71.9
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.3e-14 82.4 64 67.2
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 3.3e-14 82.4 67 62.7
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 3.3e-14 82.4 64 64.1
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 3.3e-14 82.4 57 71.9
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 4.3e-14 82.0 62 66.1
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 5.6e-14 81.6 64 67.2
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.6e-14 81.6 64 67.2
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 5.6e-14 81.6 176 36.9
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 7.3e-14 81.3 58 69.0
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 9.5e-14 80.9 165 38.8
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 9.5e-14 80.9 63 63.5
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 1.2e-13 80.5 58 67.2
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 1.2e-13 80.5 58 67.2
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 1.2e-13 80.5 67 59.7
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 1.6e-13 80.1 58 65.5
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 2.1e-13 79.7 178 37.1
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 2.1e-13 79.7 57 70.2
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 2.8e-13 79.3 57 66.7
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 2.8e-13 79.3 167 37.7
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 2.8e-13 79.3 67 59.7
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 2.8e-13 79.3 178 33.1
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 2.8e-13 79.3 58 69.0
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 2.8e-13 79.3 58 69.0
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 3.6e-13 79.0 67 59.7
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 3.6e-13 79.0 67 58.2
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 3.6e-13 79.0 62 61.3
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 3.6e-13 79.0 166 38.0
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 3.6e-13 79.0 57 70.2
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 4.7e-13 78.6 177 38.4
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 4.7e-13 78.6 181 33.7
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 6.2e-13 78.2 67 58.2
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 6.2e-13 78.2 63 63.5
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 1.1e-12 77.4 63 61.9
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 1.8e-12 76.6 155 36.1
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 2.3e-12 76.3 178 34.3
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 2.3e-12 76.3 67 58.2
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 4.0e-12 75.5 57 64.9
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 4.0e-12 75.5 175 36.0
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 4.0e-12 75.5 68 58.8
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 5.2e-12 75.1 60 65.0
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 5.2e-12 75.1 78 55.1
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 6.8e-12 74.7 57 64.9
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 6.8e-12 74.7 58 63.8
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 6.8e-12 74.7 58 63.8
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.5e-11 73.6 57 63.2
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 2.6e-11 72.8 165 35.2
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 4.4e-11 72.0 63 58.7
Lsat_1_v5_gn_5_115440 Lactuca sativa HOM05D003832 ORTHO05D004365 4.4e-11 72.0 59 59.3
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 4.4e-11 72.0 78 52.6
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 5.8e-11 71.6 175 35.4
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 5.8e-11 71.6 175 35.4
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 9.9e-11 70.9 168 35.7
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 9.9e-11 70.9 57 66.7
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 2.9e-10 69.3 170 32.4
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.9e-10 69.3 57 63.2
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.9e-10 69.3 57 63.2
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 6.4e-10 68.2 64 57.8
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 1.1e-09 67.4 51 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1832 Anthoceros agrestis HOM05D003832 ORTHO05D004365 1.4e-09 67.0 57 59.6
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.4e-09 67.0 167 32.9
Eucgr.E02240 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.4e-09 67.0 60 60.0
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 2.4e-09 66.2 45 71.1
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 4.1e-09 65.5 67 52.2
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 5.4e-09 65.1 63 49.2
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 7.1e-09 64.7 85 44.7
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 2.7e-08 62.8 57 57.9
PGR001G0004 Punica granatum HOM05D003832 ORTHO05D004365 2.7e-08 62.8 44 70.5
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 3.5e-08 62.4 82 43.9
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 7.8e-08 61.2 43 67.4
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 1.0e-07 60.8 58 56.9
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.3e-07 59.7 57 57.9
MCO05G158 Micromonas commoda HOM05D003832 ORTHO05D004365 3.0e-07 59.3 57 52.6
Lj5A766G14 Lonicera japonica HOM05D003832 ORTHO05D004365 3.9e-07 58.9 41 73.2
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 8.6e-07 57.8 109 38.5
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-06 57.0 62 54.8
BcaC06g36546 Brassica carinata HOM05D003832 ORTHO05D004365 1.9e-06 56.6 37 75.7
AUR62000790 Chenopodium quinoa HOM05D003832 ORTHO05D004365 7.3e-06 54.7 53 52.8


User provided reference genes

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