Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.2e-281 972.6 511 100.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.9e-245 851.3 511 86.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 7.3e-244 847.0 510 84.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.4e-242 842.8 511 85.1
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.8e-242 842.4 511 84.5
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 4.0e-242 841.3 511 84.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.6e-241 838.6 511 84.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.2e-240 835.5 511 82.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 6.4e-240 833.9 511 84.3
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 8.4e-240 833.6 511 84.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.1e-239 833.2 511 84.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.4e-239 832.8 511 84.0
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.4e-239 832.0 511 84.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 9.3e-239 830.1 511 83.8
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.7e-238 828.6 532 81.4
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.5e-238 828.2 511 82.6
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.4e-234 816.2 514 83.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.4e-234 816.2 508 81.7
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 6.9e-234 813.9 511 82.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.0e-233 812.4 511 79.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.6e-233 812.0 511 79.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.3e-232 809.7 511 80.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.7e-232 809.3 511 79.5
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 8.4e-232 807.0 511 79.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.2e-231 805.1 513 81.1
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.2e-231 805.1 511 80.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.2e-231 805.1 511 78.9
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 4.2e-231 804.7 511 79.1
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 7.1e-231 803.9 511 80.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 9.3e-231 803.5 511 79.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 2.7e-230 802.0 513 80.7
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.5e-230 801.6 511 81.2
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.0e-230 800.8 511 79.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 6.0e-230 800.8 511 79.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 6.0e-230 800.8 511 79.1
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.3e-229 799.7 511 79.5
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.8e-229 799.3 511 80.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.8e-229 799.3 511 80.0
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.3e-229 798.9 511 79.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.3e-229 798.9 511 80.4
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 3.9e-229 798.1 511 80.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.1e-229 797.7 511 79.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 6.7e-229 797.3 511 79.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 6.7e-229 797.3 511 79.1
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 8.7e-229 797.0 511 78.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.7e-229 797.0 511 79.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 8.7e-229 797.0 511 79.3
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.5e-228 796.2 511 78.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.9e-228 795.8 511 79.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.3e-228 794.7 511 78.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-227 793.1 511 80.0
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.6e-227 792.7 511 79.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.6e-227 792.7 511 79.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.1e-227 792.3 511 80.0
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.1e-227 792.3 511 80.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.8e-227 792.0 511 78.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 3.7e-227 791.6 511 79.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.7e-227 791.6 511 79.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.7e-227 791.6 513 78.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.8e-227 791.2 511 79.6
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.8e-227 791.2 511 79.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 6.2e-227 790.8 511 78.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.4e-226 789.6 511 79.6
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.4e-226 788.9 509 79.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.0e-226 788.1 516 78.3
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.0e-226 786.9 511 77.1
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.5e-225 786.2 511 78.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.5e-225 786.2 511 77.3
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.8e-225 784.3 512 78.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 7.6e-225 783.9 511 77.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-224 783.5 511 81.0
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.3e-224 783.1 511 77.3
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.9e-224 781.9 512 80.1
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.8e-224 781.6 511 77.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 3.8e-224 781.6 511 78.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 6.5e-224 780.8 511 78.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 8.4e-224 780.4 513 78.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.1e-223 780.0 511 79.3
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.2e-223 778.1 509 78.0
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 4.6e-222 774.6 512 76.4
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.1e-221 771.2 511 75.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.1e-221 771.2 509 77.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 6.7e-221 770.8 511 75.1
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 6.7e-221 770.8 512 76.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.3e-220 768.5 511 76.7
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.3e-220 768.1 511 78.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.3e-219 766.5 512 75.6
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.6e-219 766.1 512 75.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 4.8e-219 764.6 512 75.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-218 763.5 511 75.3
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.4e-218 763.1 512 75.6
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-218 762.7 512 74.8
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.4e-218 762.3 512 75.2
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.1e-218 761.5 547 73.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 6.9e-218 760.8 512 75.4
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 6.9e-218 760.8 512 75.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.9e-218 760.8 487 80.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-218 760.4 512 75.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 9.0e-218 760.4 512 75.0
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-217 760.0 511 75.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-217 758.8 512 75.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 7.6e-217 757.3 512 74.8
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.2e-216 755.7 512 74.6
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 6.5e-216 754.2 511 76.7
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.5e-216 753.8 512 74.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.5e-215 752.3 511 76.5
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-213 745.7 512 74.4
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.3e-213 745.7 612 66.2
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.7e-213 744.2 511 75.9
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.3e-212 741.5 512 74.0
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.3e-211 737.6 616 64.8
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 7.9e-206 720.7 509 70.5
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.3e-205 719.2 511 74.4
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 7.4e-204 714.1 514 72.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.0e-200 703.7 510 71.2
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 8.8e-197 690.6 513 69.6
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.5e-196 689.9 512 69.5
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.4e-194 683.3 509 69.0
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.6e-190 669.8 511 67.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.9e-185 651.4 433 79.2
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.9e-185 651.4 425 78.8
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 5.7e-180 634.8 507 69.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.2e-175 619.0 511 65.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.8e-172 607.4 478 66.3
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.3e-171 607.1 449 71.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 5.8e-156 555.1 511 59.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 6.2e-142 508.4 372 70.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-139 500.7 400 69.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.2e-137 494.2 507 52.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.9e-136 489.2 312 79.8
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 9.6e-127 458.0 478 58.4
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.7e-123 447.2 358 69.6
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 5.6e-119 432.2 240 90.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.2e-110 401.7 252 81.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.5e-105 386.3 497 45.1
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.7e-97 360.1 228 83.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.9e-91 340.1 541 40.3
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 5.9e-84 315.8 207 76.8
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.2e-72 276.2 164 83.5
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.7e-71 272.7 210 65.7
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.8e-64 251.1 246 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.1e-61 240.0 308 43.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 8.9e-48 195.7 263 44.9
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 3.6e-41 173.7 96 83.3
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 4.1e-29 133.7 132 59.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.6e-28 131.7 66 90.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.3e-26 123.6 251 39.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.0e-23 114.8 186 43.0
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.5e-18 97.8 50 86.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 8.1e-17 92.8 85 58.8
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.2e-13 80.5 41 90.2
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.2e-13 80.5 41 90.2
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.2e-13 80.5 60 71.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.8e-09 67.8 60 60.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 6.2e-09 66.6 58 53.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.4e-08 65.5 30 93.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.4e-08 65.5 61 54.1
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.4e-08 65.5 30 93.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.4e-08 65.5 61 54.1
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 5.3e-08 63.5 60 51.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-07 62.0 61 50.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.7e-06 58.5 235 26.4
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.2e-06 58.2 57 43.9


User provided reference genes

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