Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 8.9e-301 1036.2 533 100.0
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 2.3e-115 420.2 504 48.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 6.5e-110 402.1 492 47.4
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.4e-104 383.6 509 45.4
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 2.0e-103 380.6 507 45.2
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 2.0e-103 380.6 512 44.9
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 7.2e-101 372.1 503 45.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 2.1e-100 370.5 504 45.6
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 6.1e-100 369.0 503 45.3
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 8.0e-100 368.6 508 44.5
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 1.0e-99 368.2 511 44.8
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 4.4e-98 362.8 511 43.1
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 3.1e-96 356.7 481 45.1
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 3.5e-95 353.2 491 43.4
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 3.5e-95 353.2 494 44.5
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.7e-94 350.9 510 43.3
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.9e-94 350.1 491 42.8
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 2.1e-92 344.0 490 41.4
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.4e-91 341.3 503 42.5
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.0e-91 340.1 525 43.0
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 4.4e-90 336.3 481 43.0
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 9.8e-90 335.1 506 42.5
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.8e-89 333.6 495 42.6
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 3.7e-89 333.2 498 42.4
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 6.3e-89 332.4 436 45.0
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.4e-88 331.3 505 43.8
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.8e-88 330.9 479 43.4
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 5.4e-88 329.3 521 40.5
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 5.4e-88 329.3 511 42.9
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 1.0e-86 325.1 491 42.0
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 5.0e-86 322.8 457 43.1
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.6e-86 322.0 506 40.3
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.1e-85 321.6 499 41.3
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 1.1e-85 321.6 548 40.7
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.1e-85 321.6 500 41.2
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.5e-85 321.2 523 41.7
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 2.5e-85 320.5 486 43.0
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.2e-85 318.9 489 40.9
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 1.6e-84 317.8 491 43.8
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.6e-84 317.8 515 40.8
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 2.8e-84 317.0 506 41.1
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 3.6e-84 316.6 500 40.2
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 6.1e-84 315.8 485 41.0
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 1.8e-83 314.3 529 39.9
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.8e-83 314.3 504 41.1
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 5.2e-83 312.8 498 41.2
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 4.4e-82 309.7 487 42.1
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.7e-82 309.3 487 39.6
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.1e-80 305.1 482 41.5
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.4e-80 304.7 510 39.8
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 7.8e-79 298.9 421 44.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.0e-78 298.5 486 39.3
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.9e-78 297.0 510 37.8
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 2.1e-76 290.8 509 38.5
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.4e-75 288.1 515 37.1
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 2.3e-75 287.3 510 38.8
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.1e-75 287.0 489 41.3
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.5e-74 284.6 451 41.7
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 7.5e-74 282.3 504 37.9
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.3e-73 281.6 537 36.7
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 8.3e-73 278.9 548 37.6
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 3.5e-71 273.5 528 37.7
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 7.8e-71 272.3 503 36.6
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 2.3e-70 270.8 542 35.2
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 1.5e-69 268.1 537 37.2
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 1.9e-69 267.7 508 37.6
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 5.6e-69 266.2 508 37.0
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 4.7e-68 263.1 561 34.2
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 8.9e-67 258.8 530 34.2
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.2e-66 258.5 522 35.1
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.2e-66 258.5 440 39.1
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 5.8e-66 256.1 439 39.0
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 7.5e-66 255.8 544 34.6
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 9.8e-66 255.4 528 33.0
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 2.2e-65 254.2 282 50.0
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 3.7e-65 253.4 502 37.8
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 9.2e-64 248.8 542 34.7
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 2.1e-63 247.7 543 35.0
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.7e-63 247.3 533 36.2
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.3e-62 244.2 509 36.9
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 7.3e-61 239.2 538 36.8
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 1.7e-57 228.0 496 35.9
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.3e-54 218.4 531 32.4
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 3.9e-54 216.9 408 36.0
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.1e-53 215.3 518 32.4
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.1e-53 215.3 518 32.4
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 3.3e-53 213.8 426 35.7
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.2e-52 211.8 551 29.8
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.6e-52 211.5 417 35.0
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 4.7e-52 209.9 432 36.3
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 7.6e-50 202.6 409 35.0
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 7.6e-50 202.6 484 32.6
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.4e-48 198.4 579 30.7
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.9e-48 198.0 419 35.6
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.4e-48 197.6 416 35.8
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 9.3e-48 195.7 596 29.5
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 4.6e-47 193.4 360 37.5
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 1.5e-45 188.3 303 41.6
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 3.3e-45 187.2 325 38.8
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 3.3e-45 187.2 521 31.1
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 3.6e-44 183.7 442 33.9
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.6e-42 177.6 535 31.2
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.6e-42 177.6 538 31.4
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.7e-41 174.9 466 31.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.1e-37 162.2 304 38.8
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 2.1e-36 157.9 326 33.4
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.3e-28 132.1 166 44.0
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.2e-15 89.0 112 50.0
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.5e-15 87.4 182 32.4
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.2e-09 68.2 399 25.1
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.2e-07 62.4 97 43.3
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.6e-07 62.0 100 40.0
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.6e-07 62.0 100 40.0
Mapoly0003s0122 Marchantia polymorpha HOM05D020720 ORTHO05D007477 3.9e-06 57.4 111 33.3


User provided reference genes

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