Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 6.1e-63 244.2 143 100.0
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 5.9e-34 147.9 145 64.1
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 3.3e-32 142.1 143 58.7
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 9.5e-32 140.6 144 54.9
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 9.5e-32 140.6 153 58.2
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 2.1e-31 139.4 147 59.2
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 8.0e-31 137.5 151 62.9
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 3.0e-30 135.6 143 53.8
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 4.4e-29 131.7 141 56.7
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 2.9e-28 129.0 148 50.0
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 3.7e-28 128.6 145 51.7
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 6.4e-28 127.9 138 53.6
QL04p006494 Quercus lobata HOM05D007629 ORTHO05D009511 8.3e-28 127.5 140 60.7
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 1.4e-27 126.7 161 48.4
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 1.8e-27 126.3 103 67.0
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 1.8e-27 126.3 145 51.0
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 1.8e-27 126.3 146 51.4
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 3.2e-27 125.6 140 55.7
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 7.0e-27 124.4 146 50.0
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 7.0e-27 124.4 147 53.1
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 9.2e-27 124.0 146 54.1
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 9.2e-27 124.0 161 46.6
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 1.2e-26 123.6 145 53.8
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 1.2e-26 123.6 162 48.1
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 2.0e-26 122.9 136 55.1
Haze_03204 Corylus avellana HOM05D007629 ORTHO05D009511 2.0e-26 122.9 145 52.4
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 2.7e-26 122.5 157 56.7
Lj3g0012705 Lotus japonicus HOM05D007629 ORTHO05D009511 2.7e-26 122.5 145 52.4
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 3.5e-26 122.1 164 49.4
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 6.0e-26 121.3 143 49.0
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 7.8e-26 120.9 145 48.3
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 7.8e-26 120.9 158 50.0
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 2.3e-25 119.4 104 67.3
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 3.0e-25 119.0 145 50.3
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 3.0e-25 119.0 157 48.4
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 5.0e-25 118.2 102 63.7
Glyma.12G237100 Glycine max HOM05D007629 ORTHO05D009511 6.6e-25 117.9 145 49.0
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 8.6e-25 117.5 128 53.9
TPR.G1849 Trifolium pratense HOM05D007629 ORTHO05D009511 8.6e-25 117.5 139 54.7
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 1.1e-24 117.1 105 62.9
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.9e-24 116.3 98 66.3
Medtr8g037205 Medicago truncatula HOM05D007629 ORTHO05D009511 1.9e-24 116.3 135 53.3
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 1.9e-24 116.3 101 65.3
VMungo1127G0677 Vigna mungo HOM05D007629 ORTHO05D009511 2.5e-24 115.9 138 50.7
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 7.3e-24 114.4 149 49.0
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 1.6e-23 113.2 147 49.7
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 2.1e-23 112.8 141 48.9
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 2.8e-23 112.5 134 49.3
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 3.6e-23 112.1 150 48.0
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 3.6e-23 112.1 103 63.1
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 4.7e-23 111.7 183 43.7
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 4.7e-23 111.7 99 62.6
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 1.4e-22 110.2 143 52.4
Cpa.g.c29394.2 Carica papaya HOM05D007629 ORTHO05D009511 1.8e-22 109.8 96 62.5
Potri.001G266500 Populus trichocarpa HOM05D007629 ORTHO05D009511 1.2e-21 107.1 149 47.0
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 1.5e-21 106.7 110 58.2
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 1.5e-21 106.7 110 58.2
Nitab4.5_0026617g0010 Nicotiana tabacum HOM05D007629 ORTHO05D009511 1.5e-21 106.7 126 57.9
TWI53G0918 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 2.6e-21 105.9 96 61.5
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 4.4e-21 105.1 110 57.3
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 4.4e-21 105.1 133 49.6
TWI53G0001 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 1.7e-20 103.2 139 47.5
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 4.9e-20 101.7 102 58.8
Sc11g0009160 Simmondsia chinensis HOM05D007629 ORTHO05D009511 1.6e-18 96.7 136 47.8
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 1.0e-17 94.0 124 48.4
Aa31sc522G10 Aethionema arabicum HOM05D007629 ORTHO05D009511 1.7e-17 93.2 135 47.4
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 1.7e-17 93.2 99 55.6
Cfa010767 Carpinus fangiana HOM05D007629 ORTHO05D009511 1.7e-17 93.2 118 52.5
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 2.3e-17 92.8 99 55.6
MBI01_g26744_MAGBIO Magnolia biondii HOM05D007629 ORTHO05D009511 3.0e-17 92.4 103 49.5
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 3.0e-17 92.4 156 41.7
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 3.9e-17 92.0 148 43.9
AT1G07985 Arabidopsis thaliana HOM05D007629 ORTHO05D009511 1.5e-16 90.1 99 54.5
BcaB02g06696 Brassica carinata HOM05D007629 ORTHO05D009511 1.5e-16 90.1 99 54.5
Rhsim01G0129300 Rhododendron simsii HOM05D007629 ORTHO05D009511 1.5e-16 90.1 127 47.2
AL1G18320 Arabidopsis lyrata HOM05D007629 ORTHO05D009511 3.3e-16 89.0 99 53.5
Sed0017474 Sechium edule HOM05D007629 ORTHO05D009511 3.3e-16 89.0 90 56.7
BraA06t23712Z Brassica rapa HOM05D000280 ORTHO05D000632 1.2e-15 87.0 99 52.5
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 2.1e-15 86.3 190 36.3
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 2.1e-15 86.3 190 36.3
Peaxi162Scf00953g00011 Petunia axillaris HOM05D007629 ORTHO05D009511 2.8e-15 85.9 82 57.3
Sp1g06620 Schrenkiella parvula HOM05D007629 ORTHO05D009511 2.8e-15 85.9 99 52.5
Carub.0001s0734 Capsella rubella HOM05D007629 ORTHO05D009511 1.1e-14 84.0 99 51.5
Thhalv10009537m.g Eutrema salsugineum HOM05D007629 ORTHO05D009511 5.8e-13 78.2 95 51.6
BraA08t35446Z Brassica rapa HOM05D000280 ORTHO05D000632 7.5e-13 77.8 97 52.6
ATR0332G023 Amborella trichopoda HOM05D007629 ORTHO05D009511 2.2e-12 76.3 148 39.2
CARHR007770 Cardamine hirsuta HOM05D007629 ORTHO05D009511 3.7e-12 75.5 96 49.0
AUR62023067 Chenopodium quinoa HOM05D007629 ORTHO05D009511 2.4e-11 72.8 146 48.6
A09p66070 Brassica napus HOM05D001466 ORTHO05D001452 4.1e-11 72.0 97 46.4
BraA09t41945Z Brassica rapa HOM05D001466 ORTHO05D001452 4.1e-11 72.0 97 46.4
BcaB03g13359 Brassica carinata HOM05D007629 ORTHO05D009511 2.1e-10 69.7 93 41.9
BcaC07g42509 Brassica carinata HOM05D007629 ORTHO05D009511 4.6e-10 68.6 132 39.4
CDE10G0639 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 7.8e-10 67.8 92 44.6
C08p50220 Brassica napus HOM05D001466 ORTHO05D001452 1.7e-09 66.6 99 43.4
CDE05G0903 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 3.9e-09 65.5 93 39.8
CDE05G3301 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.9e-08 63.2 96 41.7
Ah.10g038830 Amaranthus hybridus HOM05D007629 ORTHO05D009511 2.5e-08 62.8 100 43.0
Hund16629 Selenicereus undatus HOM05D007629 ORTHO05D009511 7.3e-08 61.2 107 40.2
Sopen01g034240 Solanum pennellii HOM05D007629 ORTHO05D009511 9.5e-08 60.8 40 67.5
CDE10G1066 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 8.1e-07 57.8 121 34.7
CDE05G1807 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.1e-06 57.4 96 38.5
BolC8t52551H Brassica oleracea HOM05D001466 ORTHO05D001452 1.8e-06 56.6 97 37.1
Aqoxy6G03038 Aquilegia oxysepala HOM05D008614 ORTHO05D010420 3.1e-06 55.8 90 37.8


User provided reference genes

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