Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 6.1e-90 334.0 150 100.0
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 1.3e-60 236.5 146 73.3
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 3.9e-60 235.0 145 72.4
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 1.5e-59 233.0 150 70.0
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 3.3e-59 231.9 150 71.3
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 1.6e-58 229.6 151 70.2
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 1.1e-57 226.9 150 70.0
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 3.1e-57 225.3 151 68.2
GSVIVG01032075001 Vitis vinifera HOM05D008019 ORTHO05D010184 3.1e-57 225.3 104 90.4
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 5.2e-57 224.6 150 68.0
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 5.2e-57 224.6 150 67.3
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 2.0e-56 222.6 150 66.7
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 2.6e-56 222.2 105 87.6
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 3.4e-56 221.9 148 70.3
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 9.9e-56 220.3 105 87.6
Lj9A631G50 Lonicera japonica HOM05D008019 ORTHO05D010184 9.9e-56 220.3 151 65.6
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 9.9e-56 220.3 112 82.1
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 1.3e-55 219.9 150 65.3
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 1.7e-55 219.5 150 68.7
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 1.7e-55 219.5 150 64.0
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 2.2e-55 219.2 150 66.7
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 8.4e-55 217.2 119 76.5
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 8.4e-55 217.2 105 83.8
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 1.9e-54 216.1 104 85.6
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 5.4e-54 214.5 132 72.0
SGA_v2.0_scaffold167G38441 Striga asiatica HOM05D008019 ORTHO05D010184 1.2e-53 213.4 122 75.4
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 1.6e-53 213.0 141 68.1
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 2.1e-53 212.6 151 64.9
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 2.7e-53 212.2 150 65.3
SalBow5G2002 Salvia bowleyana HOM05D008019 ORTHO05D010184 3.5e-53 211.8 145 67.6
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 6.0e-53 211.1 150 64.0
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 6.0e-53 211.1 125 72.0
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 7.8e-53 210.7 105 81.9
MELO3C023543.2 Cucumis melo HOM05D008019 ORTHO05D010184 1.0e-52 210.3 153 62.7
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 1.3e-52 209.9 108 78.7
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 1.3e-52 209.9 108 78.7
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 1.7e-52 209.5 105 79.0
CsaV3_7G031160 Cucumis sativus L. HOM05D008019 ORTHO05D010184 2.3e-52 209.1 153 62.7
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 2.3e-52 209.1 150 62.7
unitig_750.g28450 Utricularia gibba HOM05D008019 ORTHO05D010184 2.3e-52 209.1 128 70.3
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 5.1e-52 208.0 104 81.7
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 6.6e-52 207.6 106 83.0
CDE05G1162 Ceratophyllum demersum HOM05D008019 ORTHO05D010184 8.6e-52 207.2 116 76.7
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 8.6e-52 207.2 106 83.0
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 1.1e-51 206.8 157 60.5
Duzib138G0215 Durio zibethinus HOM05D008019 ORTHO05D010184 1.1e-51 206.8 154 61.7
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.5e-51 206.5 106 82.1
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 1.5e-51 206.5 150 64.0
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 3.3e-51 205.3 139 64.7
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 3.3e-51 205.3 156 60.3
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 3.3e-51 205.3 105 78.1
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 7.3e-51 204.1 145 64.8
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 2.8e-50 202.2 135 66.7
ClCG09G004230 Citrullus lanatus HOM05D008019 ORTHO05D010184 1.4e-49 199.9 104 77.9
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 3.1e-49 198.7 199 51.8
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 9.0e-49 197.2 158 57.6
Os09g0485800 Oryza sativa ssp. japonica HOM05D008019 ORTHO05D010184 2.6e-48 195.7 107 75.7
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 9.9e-48 193.7 104 78.8
Sabra09G0046100 Salix brachista HOM05D000752 ORTHO05D000572 1.3e-47 193.4 91 86.8
SEGI_23902 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 2.7e-45 185.7 104 74.0
Migut.B01317 Erythranthe guttata HOM05D008019 ORTHO05D010184 1.8e-41 172.9 88 81.8
FAN03G3138 Fragaria x ananassa HOM05D008019 ORTHO05D010184 2.4e-41 172.6 100 72.0
Pp3c14_7420 Physcomitrium patens HOM05D008019 ORTHO05D010184 9.0e-41 170.6 107 64.5
Sed0006336 Sechium edule HOM05D008019 ORTHO05D010184 3.4e-40 168.7 150 54.7
Hund19732 Selenicereus undatus HOM05D008019 ORTHO05D010184 2.4e-38 162.5 76 86.8
Lalb_Chr19g0132131 Lupinus albus HOM05D008019 ORTHO05D010184 2.1e-37 159.5 77 84.4
ATR0605G214 Amborella trichopoda HOM05D008019 ORTHO05D010184 1.8e-36 156.4 77 83.1
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 1.5e-32 143.3 82 74.4
Zm00001eb101800 Zea mays HOM05D008019 ORTHO05D010184 7.1e-30 134.4 76 69.7
Zm00001eb101810 Zea mays HOM05D008019 ORTHO05D010184 9.3e-30 134.0 76 69.7
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 7.9e-21 104.4 103 47.6
SEGI_33125 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 5.3e-17 91.7 51 72.5
Lalb_Chr19g0132141 Lupinus albus HOM05D008019 ORTHO05D010184 2.5e-06 56.2 40 62.5
SEGI_37443 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 2.5e-06 56.2 31 71.0
Medtr8g036830 Medicago truncatula HOM05D008019 ORTHO05D010184 4.2e-06 55.5 42 52.4


User provided reference genes

Program Settings