Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 7.4e-231 803.5 409 100.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.5e-141 506.1 406 65.3
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 4.8e-129 465.3 336 71.7
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.9e-128 461.5 407 62.7
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 9.1e-128 461.1 345 69.6
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.2e-127 460.7 329 70.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.7e-127 458.0 345 69.3
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 5.1e-123 445.3 338 68.9
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.1e-122 444.1 332 64.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.1e-122 444.1 331 70.1
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.0e-122 443.4 331 69.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 5.7e-122 441.8 407 59.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.3e-121 440.7 334 68.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 2.2e-121 439.9 371 62.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.7e-121 439.1 328 69.2
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 9.1e-120 434.5 333 65.8
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.2e-119 434.1 328 69.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.2e-118 429.9 329 69.6
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-118 429.5 329 69.0
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.9e-118 429.5 329 68.4
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.8e-118 429.1 329 69.0
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.9e-117 426.8 329 68.4
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 7.2e-117 424.9 332 67.5
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-116 423.7 330 67.9
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-116 423.7 329 68.1
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.1e-116 423.3 329 67.5
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.7e-116 422.9 329 64.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.4e-115 420.6 329 67.5
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 3.0e-115 419.5 329 65.3
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.9e-115 419.1 330 67.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 5.2e-115 418.7 337 65.3
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.0e-114 416.8 336 66.4
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.3e-114 416.0 331 66.5
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.3e-114 416.0 329 65.0
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 5.7e-114 415.2 335 63.6
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.4e-114 414.8 335 64.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 7.4e-114 414.8 331 66.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 9.7e-114 414.5 335 63.3
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.7e-113 413.7 331 66.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.2e-113 413.3 405 58.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 2.2e-113 413.3 335 66.9
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 2.8e-113 412.9 332 64.2
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.7e-113 412.5 335 64.8
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 4.8e-113 412.1 329 65.7
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.2e-113 411.4 331 66.2
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-112 411.0 337 64.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-112 411.0 329 67.2
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-112 411.0 331 66.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-112 411.0 339 65.8
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.4e-112 410.6 333 65.5
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.4e-112 410.6 331 66.2
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.4e-112 409.8 345 62.6
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.1e-112 409.5 333 63.4
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.1e-112 409.5 328 65.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.3e-112 408.7 345 62.3
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 7.0e-112 408.3 334 64.1
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.2e-111 407.5 329 62.6
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.0e-111 406.8 329 63.5
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.0e-111 406.8 394 57.6
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.5e-111 405.6 329 64.7
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 5.9e-111 405.2 335 63.3
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.3e-110 404.1 341 62.5
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.3e-110 404.1 330 65.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.2e-110 403.3 336 64.9
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.9e-110 402.9 334 64.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 5.0e-110 402.1 341 63.6
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.0e-110 402.1 341 62.8
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 6.5e-110 401.7 329 63.2
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 6.5e-110 401.7 329 61.7
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 6.5e-110 401.7 341 63.0
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.5e-109 400.6 331 64.4
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 7.2e-109 398.3 333 62.5
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 9.4e-109 397.9 332 61.4
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.1e-108 396.7 329 63.2
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 4.7e-108 395.6 333 61.9
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.3e-107 393.3 329 62.6
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 8.8e-107 391.3 333 61.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 8.8e-107 391.3 331 62.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.0e-106 390.2 281 66.9
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.4e-106 389.4 332 62.7
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.8e-105 386.3 330 58.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.1e-104 384.4 332 62.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.4e-104 383.3 349 61.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.1e-104 382.9 329 61.7
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 5.3e-104 382.1 328 60.4
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 9.1e-104 381.3 329 62.3
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.6e-103 380.6 337 59.9
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 7.7e-103 378.3 329 60.5
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 7.7e-103 378.3 346 55.2
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.0e-102 377.9 329 61.1
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.2e-102 376.7 268 63.8
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.5e-101 374.0 329 62.0
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 2.5e-101 373.2 329 60.5
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 7.2e-101 371.7 333 56.8
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 6.1e-100 368.6 331 59.2
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.8e-99 367.1 454 49.8
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.2e-99 365.5 341 58.1
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 6.8e-99 365.2 329 60.8
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 4.4e-98 362.5 326 62.6
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 5.7e-98 362.1 329 53.8
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 9.8e-98 361.3 336 56.8
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.7e-97 360.5 305 63.3
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 2.8e-97 359.8 332 56.9
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 4.8e-97 359.0 342 55.8
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.3e-97 358.6 329 58.4
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-96 357.8 328 57.6
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.4e-96 356.7 239 69.9
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.6e-95 354.0 328 57.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-95 352.8 201 74.6
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 5.0e-94 349.0 277 63.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.5e-93 346.7 365 51.2
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.2e-92 344.4 336 56.2
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.0e-92 341.7 295 64.1
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.3e-91 340.1 288 56.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 4.0e-91 339.3 299 62.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-91 338.6 329 55.0
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 8.9e-91 338.2 358 51.4
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 8.9e-91 338.2 329 54.4
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.6e-90 336.7 336 55.1
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-90 336.3 328 54.9
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 4.4e-90 335.9 329 54.1
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 5.7e-90 335.5 329 54.4
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 5.7e-90 335.5 329 54.4
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 7.5e-90 335.1 329 54.1
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 9.8e-90 334.7 328 54.6
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-88 331.3 324 56.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 5.9e-87 325.5 330 49.4
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.3e-86 324.3 324 49.4
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-86 323.9 333 49.5
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 7.3e-85 318.5 189 72.5
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 7.3e-85 318.5 342 52.6
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-84 317.0 278 63.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-83 314.7 321 52.0
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.4e-83 314.3 242 60.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 5.2e-83 312.4 381 45.7
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.2e-81 307.0 329 51.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 3.7e-81 306.2 334 53.0
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 3.7e-81 306.2 335 51.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.7e-81 306.2 335 53.1
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.3e-81 305.1 265 58.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-80 303.5 363 50.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 2.0e-79 300.4 333 51.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 6.0e-79 298.9 337 51.6
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.6e-78 295.0 443 44.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 8.6e-78 295.0 333 49.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.5e-77 294.3 338 49.7
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.5e-77 293.5 339 51.0
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 3.1e-75 286.6 346 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 5.2e-75 285.8 325 50.8
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.2e-75 285.8 337 49.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 5.8e-74 282.3 331 47.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.3e-70 271.2 329 48.9
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.3e-69 265.4 332 49.4
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-68 263.1 195 65.1
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.3e-61 240.0 329 41.9
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 9.9e-58 228.4 339 44.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-57 227.6 334 42.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-53 214.9 321 43.6
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.3e-53 213.4 172 61.0
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 1.1e-51 208.4 190 46.3
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 4.6e-47 193.0 344 37.5
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.8e-41 173.3 93 81.7
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 2.0e-34 151.0 74 89.2
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 6.5e-33 146.0 74 89.2
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 6.9e-19 99.4 106 40.6
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-13 81.6 38 89.5
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 5.7e-13 79.7 37 89.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.1e-11 75.5 64 68.8


User provided reference genes

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