Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 1.3e-17 92.4 62 100.0
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 4.1e-16 87.4 62 93.5
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 61.3
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 61.3
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 61.3
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 61.3
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 61.3
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 2.2e-09 65.1 62 61.3
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 2.2e-09 65.1 62 61.3
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 61.3
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 61.3
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 61.3
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 61.3
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 61.3
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 66.1
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 6.4e-09 63.5 63 63.5
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 8.3e-09 63.2 62 59.7
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 8.3e-09 63.2 62 59.7
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.1e-08 62.8 62 58.1
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 62.9
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 62.9
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 62.9
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 58.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 58.1
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 58.1
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.4e-08 61.6 64 60.9
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 58.1
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 62.9
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 62.9
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 3.2e-08 61.2 63 60.3
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 59.7
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 7.1e-08 60.1 62 58.1
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 7.1e-08 60.1 62 58.1
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 56.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 56.5
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 58.1
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.2e-07 59.3 63 58.7
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 1.2e-07 59.3 64 59.4
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.1e-07 58.5 63 57.1
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 2.7e-07 58.2 67 56.7
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.7e-07 58.2 62 59.7
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 3.5e-07 57.8 62 54.8
Hma1.2p1_0312F.1_g121430 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 3.5e-07 57.8 62 67.7
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 4.6e-07 57.4 70 64.3
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 4.6e-07 57.4 62 56.5
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.0e-07 57.0 62 56.5
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 7.8e-07 56.6 67 55.2
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 54.8
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 53.2
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 7.8e-07 56.6 65 64.6
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 7.8e-07 56.6 66 66.7
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 54.8
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 54.8
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 54.8
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 54.8
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 54.8
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 1.7e-06 55.5 65 52.3
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 1.7e-06 55.5 64 56.2
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 2.3e-06 55.1 63 61.9
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.3e-06 55.1 62 51.6
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 2.3e-06 55.1 62 53.2
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.9e-06 54.3 62 56.5
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.9e-06 54.3 62 58.1
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.9e-06 54.3 62 56.5
COL.COLO4_28709 Corchorus olitorius HOM05D005524 ORTHO05D005392 5.1e-06 53.9 63 68.3
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 5.1e-06 53.9 60 53.3
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 5.1e-06 53.9 62 58.1


User provided reference genes

Program Settings