Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 8.9e-19 96.3 62 100.0
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 8.3e-17 89.7 62 93.5
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 59.7
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 59.7
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 59.7
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.2e-09 65.1 62 59.7
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 2.2e-09 65.1 62 59.7
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 2.9e-09 64.7 62 59.7
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 2.9e-09 64.7 62 59.7
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 64.5
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 4.9e-09 63.9 62 59.7
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 58.1
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 58.1
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 61.3
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 61.3
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 61.3
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 8.3e-09 63.2 63 61.9
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-08 62.8 62 58.1
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 1.1e-08 62.8 62 58.1
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.1e-08 62.8 64 59.4
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 56.5
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 56.5
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.4e-08 62.4 62 61.3
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 3.2e-08 61.2 62 56.5
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 3.2e-08 61.2 62 56.5
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 3.2e-08 61.2 62 56.5
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 3.2e-08 61.2 62 61.3
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 4.1e-08 60.8 63 58.7
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 56.5
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 56.5
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 54.8
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 58.1
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 54.8
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 56.5
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 1.6e-07 58.9 67 55.2
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 1.6e-07 58.9 62 54.8
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 1.6e-07 58.9 62 54.8
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 1.6e-07 58.9 62 54.8
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.6e-07 58.9 63 55.6
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 1.6e-07 58.9 64 57.8
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-07 58.5 62 53.2
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.1e-07 58.5 62 56.5
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.7e-07 58.2 63 54.0
Hma1.2p1_0312F.1_g121430 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.7e-07 58.2 62 66.1
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 2.7e-07 58.2 62 54.8
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 3.5e-07 57.8 70 61.4
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 4.6e-07 57.4 67 53.7
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 4.6e-07 57.4 62 51.6
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 6.0e-07 57.0 65 63.1
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 6.0e-07 57.0 66 63.6
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 53.2
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 53.2
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 58.1
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 53.2
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 53.2
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 1.3e-06 55.8 63 60.3
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 50.0
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 51.6
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.7e-06 55.5 62 54.8
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.7e-06 55.5 62 56.5
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 2.3e-06 55.1 65 50.8
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.3e-06 55.1 64 54.7
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 3.0e-06 54.7 60 51.7
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.0e-06 54.7 62 54.8
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 3.9e-06 54.3 64 53.1
COL.COLO4_28709 Corchorus olitorius HOM05D005524 ORTHO05D005392 5.1e-06 53.9 63 65.1


User provided reference genes

Program Settings