Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27660 Coffea canephora HOM05D003741 ORTHO05D004247 3.3e-74 281.6 137 100.0
Dinv03516 Davidia involucrata HOM05D003741 ORTHO05D004247 2.7e-36 155.6 119 61.3
CSS0030537 Camellia sinensis var. sinensis HOM05D003741 ORTHO05D004247 3.6e-36 155.2 121 61.2
Hma1.2p1_0098F.1_g048300 Hydrangea macrophylla HOM05D003741 ORTHO05D004247 1.0e-35 153.7 119 61.3
GSVIVG01028272001 Vitis vinifera HOM05D003741 ORTHO05D004247 5.1e-35 151.4 127 59.1
Cc02_g27680 Coffea canephora HOM05D003741 ORTHO05D004247 6.7e-35 151.0 83 90.4
Actinidia06418 Actinidia chinensis HOM05D003741 ORTHO05D004247 7.4e-34 147.5 111 64.0
Manes.05G006300 Manihot esculenta HOM05D003741 ORTHO05D004247 7.4e-34 147.5 118 57.6
Eucgr.A00982 Eucalyptus grandis HOM05D003741 ORTHO05D004247 9.7e-34 147.1 102 66.7
MD17G1285700 Malus domestica HOM05D003741 ORTHO05D004247 9.7e-34 147.1 118 61.0
Potri.002G184300 Populus trichocarpa HOM05D003741 ORTHO05D004247 9.7e-34 147.1 114 60.5
Prupe.3G000200 Prunus persica HOM05D003741 ORTHO05D004247 1.7e-33 146.4 118 59.3
COL.COLO4_23087 Corchorus olitorius HOM05D003741 ORTHO05D004247 3.7e-33 145.2 106 63.2
TWI23G0544 Tripterygium wilfordii HOM05D003741 ORTHO05D004247 4.8e-33 144.8 116 63.8
PGR042G0131 Punica granatum HOM05D003741 ORTHO05D004247 1.1e-32 143.7 102 63.7
Cpa.g.sc57.55 Carica papaya HOM05D003741 ORTHO05D004247 1.8e-32 142.9 114 60.5
Potri.002G184201 Populus trichocarpa HOM05D003741 ORTHO05D004247 1.8e-32 142.9 116 57.8
QL01p026787 Quercus lobata HOM05D003741 ORTHO05D004247 5.3e-32 141.4 118 56.8
Duzib138G0796 Durio zibethinus HOM05D003741 ORTHO05D004247 7.0e-32 141.0 119 57.1
Solyc02g069090.3 Solanum lycopersicum HOM05D003741 ORTHO05D004247 7.0e-32 141.0 118 57.6
TAR636G2991 Trochodendron aralioides HOM05D003741 ORTHO05D004247 7.0e-32 141.0 119 57.1
Ciclev10020859m.g Citrus clementina HOM05D003741 ORTHO05D004247 9.1e-32 140.6 116 59.5
Sabra02G0131500 Salix brachista HOM05D003741 ORTHO05D004247 9.1e-32 140.6 109 60.6
CANSAT11G2508 Cannabis sativa HOM05D003741 ORTHO05D004247 2.0e-31 139.4 119 58.0
Sabra02G0131600 Salix brachista HOM05D003741 ORTHO05D004247 2.6e-31 139.0 114 57.9
CiPaw.07G128200 Carya illinoinensis HOM05D003741 ORTHO05D004247 3.5e-31 138.7 114 57.9
Gorai.007G115600 Gossypium raimondii HOM05D003741 ORTHO05D004247 3.5e-31 138.7 120 56.7
Atru.chr5.821 Acer truncatum HOM05D003741 ORTHO05D004247 5.9e-31 137.9 117 59.8
Duzib133G0965 Durio zibethinus HOM05D003741 ORTHO05D004247 5.9e-31 137.9 116 58.6
Migut.D00004 Erythranthe guttata HOM05D003741 ORTHO05D004247 5.9e-31 137.9 118 55.9
Lj1g0024084 Lotus japonicus HOM05D003741 ORTHO05D004247 5.9e-31 137.9 115 62.6
Gohir.D11G107766 Gossypium hirsutum HOM05D003741 ORTHO05D004247 7.7e-31 137.5 118 56.8
MSTRG.21732 Avicennia marina HOM05D003741 ORTHO05D004247 1.0e-30 137.1 118 58.5
Gohir.D11G050925 Gossypium hirsutum HOM05D003741 ORTHO05D004247 1.0e-30 137.1 118 56.8
Gohir.D11G051000 Gossypium hirsutum HOM05D003741 ORTHO05D004247 1.0e-30 137.1 118 56.8
Oeu060889.1 Olea europaea HOM05D003741 ORTHO05D004247 1.0e-30 137.1 120 58.3
Lju2566A1T38 Lonicera japonica HOM05D003741 ORTHO05D004247 1.3e-30 136.7 125 58.4
Gohir.A11G103300 Gossypium hirsutum HOM05D003741 ORTHO05D004247 1.7e-30 136.3 120 55.8
Gorai.007G055400 Gossypium raimondii HOM05D003741 ORTHO05D004247 1.7e-30 136.3 102 60.8
Manes.01G236900 Manihot esculenta HOM05D003741 ORTHO05D004247 1.7e-30 136.3 116 57.8
Rhsim01G0001600 Rhododendron simsii HOM05D003741 ORTHO05D004247 1.7e-30 136.3 89 69.7
Nitab4.5_0003773g0090 Nicotiana tabacum HOM05D001270 ORTHO05D001099 2.2e-30 136.0 114 58.8
Thecc.01G328700 Theobroma cacao HOM05D003741 ORTHO05D004247 3.8e-30 135.2 119 55.5
vmacro02353 Vaccinium macrocarpon HOM05D003741 ORTHO05D004247 8.5e-30 134.0 89 68.5
Aqoxy2G02613 Aquilegia oxysepala HOM05D003741 ORTHO05D004247 1.4e-29 133.3 94 66.0
Medtr7g111050 Medicago truncatula HOM05D003741 ORTHO05D004247 1.4e-29 133.3 119 55.5
Potri.014G109801 Populus trichocarpa HOM05D003741 ORTHO05D004247 1.4e-29 133.3 119 53.8
THA.LOC104815908 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 1.4e-29 133.3 117 55.6
Nn4g25264 Nelumbo nucifera HOM05D003741 ORTHO05D004247 1.9e-29 132.9 119 53.8
Peaxi162Scf00149g00919 Petunia axillaris HOM05D003741 ORTHO05D004247 1.9e-29 132.9 102 60.8
CDE05G0438 Ceratophyllum demersum HOM05D003741 ORTHO05D004247 2.5e-29 132.5 114 57.9
Oeu060888.1 Olea europaea HOM05D003741 ORTHO05D004247 2.5e-29 132.5 93 64.5
RcHm_v2.0_Chr3g0485051 Rosa chinensis HOM05D003741 ORTHO05D004247 2.5e-29 132.5 118 56.8
Sopen02g018230 Solanum pennellii HOM05D003741 ORTHO05D004247 2.5e-29 132.5 111 56.8
Atru.chr5.823 Acer truncatum HOM05D003741 ORTHO05D004247 3.2e-29 132.1 115 58.3
DCAR_030726 Daucus carota HOM05D003741 ORTHO05D004247 3.2e-29 132.1 97 62.9
THA.LOC104825920 Tarenaya hassleriana HOM05D003741 ORTHO05D004247 3.2e-29 132.1 116 56.0
Nitab4.5_0002056g0060 Nicotiana tabacum HOM05D003741 ORTHO05D004247 4.2e-29 131.7 127 49.6
Haze_05173 Corylus avellana HOM05D003741 ORTHO05D004247 5.5e-29 131.3 89 66.3
Haze_05174 Corylus avellana HOM05D003741 ORTHO05D004247 1.2e-28 130.2 112 57.1
CAN.G1222.10 Capsicum annuum HOM05D003741 ORTHO05D004247 1.6e-28 129.8 111 55.9
Solyc02g069100.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.6e-28 129.8 117 56.4
Solyc02g069110.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.6e-28 129.8 122 51.6
CARHR250060 Cardamine hirsuta HOM05D003741 ORTHO05D004247 2.1e-28 129.4 117 53.8
Glyma.19G223300 Glycine max HOM05D003741 ORTHO05D004247 2.1e-28 129.4 94 63.8
Medtr7g111060 Medicago truncatula HOM05D003741 ORTHO05D004247 2.1e-28 129.4 117 54.7
Nitab4.5_0002463g0040 Nicotiana tabacum HOM05D003741 ORTHO05D004247 4.7e-28 128.3 113 54.9
arahy.Tifrunner.gnm1.ann1.00ZDTM Arachis hypogaea HOM05D003741 ORTHO05D004247 6.1e-28 127.9 90 65.6
arahy.Tifrunner.gnm1.ann1.8L6AK6 Arachis hypogaea HOM05D003741 ORTHO05D004247 6.1e-28 127.9 114 57.9
CsaV3_3G043370 Cucumis sativus L. HOM05D003741 ORTHO05D004247 6.1e-28 127.9 116 55.2
Psat3g015680 Pisum sativum HOM05D003741 ORTHO05D004247 8.0e-28 127.5 116 56.0
ClCG10G013270 Citrullus lanatus HOM05D003741 ORTHO05D004247 1.0e-27 127.1 111 55.9
CAN.G1222.9 Capsicum annuum HOM05D003741 ORTHO05D004247 1.4e-27 126.7 112 55.4
FvH4_1g25910 Fragaria vesca HOM05D003741 ORTHO05D004247 1.4e-27 126.7 118 55.1
FAN28G0860 Fragaria x ananassa HOM05D003741 ORTHO05D004247 1.4e-27 126.7 132 48.5
TPR.G8367 Trifolium pratense HOM05D003741 ORTHO05D004247 1.4e-27 126.7 114 57.9
Glyma.03G226300 Glycine max HOM05D003741 ORTHO05D004247 3.0e-27 125.6 125 52.0
AT4G01610 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 3.9e-27 125.2 116 53.4
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.9e-27 125.2 83 66.3
Sed0014336 Sechium edule HOM05D003741 ORTHO05D004247 6.7e-27 124.4 119 52.1
AL6G51730 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 8.8e-27 124.0 116 52.6
Sed0003001 Sechium edule HOM05D003741 ORTHO05D004247 8.8e-27 124.0 115 53.9
Psat3g015720 Pisum sativum HOM05D003741 ORTHO05D004247 1.5e-26 123.2 116 52.6
Lalb_Chr18g0046281 Lupinus albus HOM05D003741 ORTHO05D004247 2.6e-26 122.5 94 60.6
Hund18513 Selenicereus undatus HOM05D003741 ORTHO05D004247 2.6e-26 122.5 106 55.7
BcaB01g02127 Brassica carinata HOM05D003741 ORTHO05D004247 3.3e-26 122.1 119 49.6
Phvul.001G220100 Phaseolus vulgaris HOM05D003741 ORTHO05D004247 3.3e-26 122.1 124 54.0
ATR0796G236 Amborella trichopoda HOM05D003741 ORTHO05D004247 7.4e-26 120.9 117 49.6
Carub.0006s3558 Capsella rubella HOM05D003741 ORTHO05D004247 7.4e-26 120.9 116 50.9
Ah.15g095460 Amaranthus hybridus HOM05D003741 ORTHO05D004247 9.7e-26 120.6 92 57.6
Thhalv10028753m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 1.3e-25 120.2 119 52.9
HPP92_017316 Vanilla planifolia HOM05D003741 ORTHO05D004247 1.3e-25 120.2 116 51.7
VMungo1383G0455 Vigna mungo HOM05D003741 ORTHO05D004247 1.3e-25 120.2 122 49.2
A09p01170 Brassica napus HOM05D003741 ORTHO05D004247 2.2e-25 119.4 117 52.1
BraA09t35787Z Brassica rapa HOM05D003741 ORTHO05D004247 2.2e-25 119.4 117 52.1
FAN19G1627 Fragaria x ananassa HOM05D003741 ORTHO05D004247 2.8e-25 119.0 115 53.9
Lalb_Chr04g0260241 Lupinus albus HOM05D003741 ORTHO05D004247 2.8e-25 119.0 89 61.8
BcaC04g24082 Brassica carinata HOM05D003741 ORTHO05D004247 3.7e-25 118.6 117 50.4
SGA_v2.0_scaffold80G25671 Striga asiatica HOM05D003741 ORTHO05D004247 3.7e-25 118.6 119 51.3
C09p01250 Brassica napus HOM05D003741 ORTHO05D004247 4.8e-25 118.2 117 50.4
Sp1g01380 Schrenkiella parvula HOM05D003741 ORTHO05D004247 4.8e-25 118.2 121 49.6
PSO761G0307 Papaver somniferum HOM05D003741 ORTHO05D004247 6.3e-25 117.9 103 56.3
PSO210G2167 Papaver somniferum HOM05D003741 ORTHO05D004247 8.2e-25 117.5 95 56.8
AUR62022081 Chenopodium quinoa HOM05D003741 ORTHO05D004247 1.1e-24 117.1 116 49.1
Thhalv10008009m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 1.1e-24 117.1 118 50.0
Aa31LG5G1330 Aethionema arabicum HOM05D003741 ORTHO05D004247 1.4e-24 116.7 116 49.1
Ah.08g218400 Amaranthus hybridus HOM05D003741 ORTHO05D004247 1.8e-24 116.3 117 50.4
CARHR001840 Cardamine hirsuta HOM05D003741 ORTHO05D004247 2.4e-24 115.9 128 45.3
PSO210G0649 Papaver somniferum HOM05D003741 ORTHO05D004247 2.4e-24 115.9 95 57.9
BcaC06g35601 Brassica carinata HOM05D003741 ORTHO05D004247 4.1e-24 115.2 119 48.7
AUR62001249 Chenopodium quinoa HOM05D003741 ORTHO05D004247 4.1e-24 115.2 110 50.0
Sp6g01520 Schrenkiella parvula HOM05D003741 ORTHO05D004247 4.1e-24 115.2 120 49.2
BcaB01g06137 Brassica carinata HOM05D003741 ORTHO05D004247 5.3e-24 114.8 118 49.2
BolC9t53059H Brassica oleracea HOM05D003741 ORTHO05D004247 5.3e-24 114.8 114 50.9
Hund05614 Selenicereus undatus HOM05D003741 ORTHO05D004247 5.3e-24 114.8 113 52.2
Carub.0001s0134 Capsella rubella HOM05D003741 ORTHO05D004247 9.1e-24 114.0 115 50.4
Zm00001eb322580 Zea mays HOM05D003741 ORTHO05D004247 9.1e-24 114.0 122 45.1
C07p13080 Brassica napus HOM05D003741 ORTHO05D004247 2.0e-23 112.8 117 48.7
DCAR_002344 Daucus carota HOM05D003741 ORTHO05D004247 2.0e-23 112.8 80 65.0
BolC3t12578H Brassica oleracea HOM05D003741 ORTHO05D004247 2.6e-23 112.5 115 49.6
BcaB03g13517 Brassica carinata HOM05D003741 ORTHO05D004247 5.9e-23 111.3 122 45.1
A08p37710 Brassica napus HOM05D003741 ORTHO05D004247 5.9e-23 111.3 116 49.1
BraA08t35667Z Brassica rapa HOM05D003741 ORTHO05D004247 5.9e-23 111.3 116 49.1
AL1G11640 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 1.0e-22 110.5 121 46.3
AL1G11630 Arabidopsis lyrata HOM05D003741 ORTHO05D004247 1.3e-22 110.2 106 50.9
AT1G02305 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 2.2e-22 109.4 94 55.3
CARHR001600 Cardamine hirsuta HOM05D003741 ORTHO05D004247 5.0e-22 108.2 117 47.0
Cfa004932 Carpinus fangiana HOM05D003741 ORTHO05D004247 8.5e-22 107.5 65 70.8
Peaxi162Scf00149g01016 Petunia axillaris HOM05D003741 ORTHO05D004247 5.5e-21 104.8 111 48.6
BcaC02g12465 Brassica carinata HOM05D003741 ORTHO05D004247 7.2e-21 104.4 119 46.2
C04p03330 Brassica napus HOM05D003741 ORTHO05D004247 1.6e-20 103.2 125 45.6
CAN.G1222.12 Capsicum annuum HOM05D003741 ORTHO05D004247 4.7e-20 101.7 117 45.3
BraA07t28072Z Brassica rapa HOM05D003741 ORTHO05D004247 1.0e-19 100.5 80 57.5
A07p02730 Brassica napus HOM05D003741 ORTHO05D004247 1.2e-18 97.1 79 57.0
Os05g0310500 Oryza sativa ssp. japonica HOM05D003741 ORTHO05D004247 1.5e-18 96.7 131 39.7
AT1G02300 Arabidopsis thaliana HOM05D003741 ORTHO05D004247 2.0e-18 96.3 110 48.2
Sc05g0003530 Simmondsia chinensis HOM05D003741 ORTHO05D004247 4.8e-17 91.7 65 61.5
BolC8t46806H Brassica oleracea HOM05D003741 ORTHO05D004247 8.3e-17 90.9 104 47.1
TAR636G3591 Trochodendron aralioides HOM05D003741 ORTHO05D004247 3.1e-16 89.0 53 71.7
CAN.G1153.3 Capsicum annuum HOM05D003741 ORTHO05D004247 3.5e-15 85.5 87 49.4
SMO351G0395 Selaginella moellendorffii HOM05D003741 ORTHO05D004247 5.9e-15 84.7 98 44.9
AagrBONN_evm.TU.Sc2ySwM_117.76 Anthoceros agrestis HOM05D003741 ORTHO05D004247 1.3e-14 83.6 88 47.7
arahy.Tifrunner.gnm1.ann1.07ATAK Arachis hypogaea HOM05D003741 ORTHO05D004247 1.7e-14 83.2 57 66.7
C08p00070 Brassica napus HOM05D003741 ORTHO05D004247 8.5e-14 80.9 83 49.4
CAN.G758.10 Capsicum annuum HOM05D003741 ORTHO05D004247 7.2e-13 77.8 54 64.8
Ca_09258_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 7.2e-13 77.8 83 50.6
CAN.G1222.15 Capsicum annuum HOM05D003741 ORTHO05D004247 4.7e-12 75.1 71 52.1
Pp3c10_7510 Physcomitrium patens HOM05D003741 ORTHO05D004247 6.1e-12 74.7 118 39.0
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 1.4e-11 73.6 61 59.0
arahy.Tifrunner.gnm1.ann1.7SL7L9 Arachis hypogaea HOM05D001812 ORTHO05D004247 1.8e-11 73.2 52 61.5
CAN.G1222.7 Capsicum annuum HOM05D003741 ORTHO05D004247 1.8e-11 73.2 84 46.4
arahy.Tifrunner.gnm1.ann1.476X2T Arachis hypogaea HOM05D001812 ORTHO05D004247 2.3e-11 72.8 56 58.9
EL10Ac7g18033 Beta vulgaris HOM05D003741 ORTHO05D004247 5.2e-11 71.6 63 52.4
Ca_09259_v3 Cicer arietinum L. HOM05D003741 ORTHO05D004247 2.0e-10 69.7 80 51.2
BolC7t43486H Brassica oleracea HOM05D000996 ORTHO05D017521 2.6e-10 69.3 61 52.5
Mapoly0032s0066 Marchantia polymorpha HOM05D003741 ORTHO05D004247 2.6e-10 69.3 134 33.6
BraSC37t46143Z Brassica rapa HOM05D000996 ORTHO05D017521 5.7e-10 68.2 56 55.4
Aa31LG1G10210 Aethionema arabicum HOM05D003741 ORTHO05D004247 9.8e-10 67.4 77 45.5
BolC7t41802H Brassica oleracea HOM05D003741 ORTHO05D004247 1.3e-09 67.0 86 41.9
C04p28420 Brassica napus HOM05D000996 ORTHO05D017521 1.4e-08 63.5 53 54.7
BolC4t24388H Brassica oleracea HOM05D000996 ORTHO05D017521 1.4e-08 63.5 53 54.7
QL01p026795 Quercus lobata HOM05D003741 ORTHO05D004247 5.4e-08 61.6 34 70.6
CAN.G1629.1 Capsicum annuum HOM05D003741 ORTHO05D004247 7.0e-08 61.2 43 62.8
A06p20790 Brassica napus HOM05D000222 ORTHO05D017521 2.0e-07 59.7 56 51.8
CBR_g2790 Chara braunii HOM05D003741 ORTHO05D004247 4.5e-07 58.5 92 33.7


User provided reference genes

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