Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 6.1e-79 297.4 143 100.0
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.5e-26 122.1 63 93.7
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 6.6e-25 117.9 74 75.7
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 8.6e-25 117.5 74 74.3
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.5e-24 115.9 74 73.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.1e-23 112.8 74 68.9
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.1e-23 112.8 74 70.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.8e-23 112.5 74 74.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.6e-23 112.1 74 71.6
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.6e-23 112.1 74 70.3
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.6e-23 112.1 74 73.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.7e-23 111.7 74 70.3
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.7e-23 111.7 74 71.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 6.2e-23 111.3 74 68.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 6.2e-23 111.3 72 72.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 8.0e-23 110.9 74 70.3
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.1e-22 110.5 74 70.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.1e-22 110.5 74 70.3
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-22 110.5 74 70.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.1e-22 110.5 74 71.6
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.3e-22 109.4 74 71.6
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.3e-22 109.4 74 68.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.1e-22 109.0 74 67.6
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 4.0e-22 108.6 74 68.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 4.0e-22 108.6 74 70.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.0e-22 108.6 74 70.3
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.0e-22 108.6 74 66.2
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.0e-22 108.6 156 39.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.0e-22 108.6 74 67.6
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 5.2e-22 108.2 74 70.3
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 6.8e-22 107.8 74 64.9
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 6.8e-22 107.8 74 64.9
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 6.8e-22 107.8 74 66.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.8e-22 107.8 74 68.9
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 8.9e-22 107.5 74 67.6
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.2e-21 107.1 74 66.2
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.5e-21 106.7 74 71.6
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.5e-21 106.7 74 68.9
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.5e-21 106.7 74 66.2
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.4e-21 105.5 62 75.8
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.4e-21 105.5 74 70.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.4e-21 105.1 74 67.6
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 5.8e-21 104.8 74 67.6
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.8e-21 104.8 74 67.6
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 9.8e-21 104.0 74 63.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 9.8e-21 104.0 90 55.6
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.3e-20 103.6 62 75.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.3e-20 103.6 74 67.6
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.7e-20 103.2 74 66.2
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.7e-20 103.2 74 64.9
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.7e-20 103.2 74 66.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.2e-20 102.8 74 66.2
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.2e-20 102.8 74 67.6
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.2e-20 102.8 74 60.8
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.9e-20 102.4 74 67.6
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.7e-20 102.1 74 63.5
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.7e-20 102.1 74 63.5
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.7e-20 102.1 88 59.1
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.7e-20 102.1 74 63.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.9e-20 101.7 74 62.2
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 6.4e-20 101.3 74 64.9
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 8.3e-20 100.9 76 61.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 8.3e-20 100.9 74 62.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 8.3e-20 100.9 74 62.2
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.1e-19 100.5 74 62.2
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.1e-19 100.5 74 62.2
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-19 100.5 74 63.5
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.4e-19 100.1 75 64.0
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.9e-19 99.8 74 62.2
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.9e-19 99.8 74 60.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.9e-19 99.8 74 62.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.9e-19 99.8 74 62.2
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.9e-19 99.8 74 60.8
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.4e-19 99.4 74 62.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.4e-19 99.4 74 60.8
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-19 99.4 74 58.1
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-19 99.4 74 58.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.2e-19 99.0 74 62.2
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.2e-19 99.0 74 62.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.1e-19 98.6 74 62.2
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 5.4e-19 98.2 74 59.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.4e-19 98.2 74 59.5
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 7.0e-19 97.8 74 60.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 7.0e-19 97.8 74 63.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.0e-19 97.8 74 60.8
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.2e-19 97.4 74 59.5
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 9.2e-19 97.4 74 59.5
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 9.2e-19 97.4 74 59.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.2e-18 97.1 62 72.6
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.6e-18 96.7 74 59.5
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.6e-18 96.7 74 62.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-18 96.7 74 58.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-18 96.7 74 60.8
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.1e-18 96.3 74 59.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.1e-18 96.3 88 56.8
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.7e-18 95.9 74 59.5
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 4.6e-18 95.1 74 60.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.0e-17 94.0 74 60.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.3e-17 92.8 74 56.8
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.3e-17 92.8 74 58.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.0e-17 92.4 74 56.8
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.0e-17 92.4 74 56.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.0e-17 92.4 74 55.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.9e-17 92.0 74 60.8
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 3.9e-17 92.0 74 60.8
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.2e-15 87.0 74 52.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.4e-14 83.6 74 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.3e-14 82.8 68 50.0
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 3.1e-14 82.4 98 45.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-14 82.4 74 48.6
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.2e-14 81.6 71 50.7
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.5e-13 80.1 42 78.6
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.0e-13 79.7 46 76.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.4e-13 79.0 47 70.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 7.5e-13 77.8 71 46.5
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 7.5e-13 77.8 71 46.5
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 7.5e-13 77.8 71 46.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 9.9e-13 77.4 71 47.9
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.3e-12 77.0 71 47.9
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.9e-12 75.9 42 76.2
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.9e-12 75.9 74 47.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.7e-12 75.5 71 47.9
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.4e-11 73.6 76 47.4
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.9e-11 73.2 53 64.2
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.1e-11 71.2 53 60.4
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 9.2e-11 70.9 54 59.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.7e-09 66.6 72 47.2
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 5.1e-09 65.1 72 45.8
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 6.6e-09 64.7 69 39.1
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 5.6e-08 61.6 43 67.4


User provided reference genes

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