Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.2e-216 756.1 364 100.0
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 7.9e-184 647.1 363 86.0
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 7.9e-184 647.1 366 85.5
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 7.4e-182 640.6 361 84.8
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.8e-180 636.0 364 84.1
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.0e-180 634.0 366 83.6
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.6e-179 632.1 362 83.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 7.7e-179 630.6 362 84.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.2e-178 629.0 371 82.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 5.0e-178 627.9 363 82.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 8.5e-178 627.1 358 84.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 8.5e-178 627.1 358 84.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.2e-177 625.2 362 81.5
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 4.2e-177 624.8 361 83.4
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 9.4e-177 623.6 362 82.6
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 9.4e-177 623.6 362 83.4
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.2e-176 623.2 389 78.7
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.6e-176 622.9 362 84.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 2.1e-176 622.5 364 83.2
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.7e-176 622.1 357 83.5
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 3.6e-176 621.7 362 82.6
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 4.7e-176 621.3 362 82.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 8.0e-176 620.5 362 83.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 8.0e-176 620.5 362 82.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.3e-175 619.0 361 81.4
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.3e-175 619.0 362 82.9
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.3e-175 619.0 367 81.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 3.0e-175 618.6 361 83.1
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 5.2e-175 617.8 362 82.0
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.1e-174 616.7 365 81.4
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.5e-174 616.3 362 82.3
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.4e-174 614.8 365 81.9
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.2e-173 612.5 362 81.8
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.2e-173 612.5 362 81.8
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 3.7e-173 611.7 362 82.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 8.2e-173 610.5 367 80.7
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.8e-172 609.4 361 80.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.4e-172 609.0 360 81.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 4.1e-172 608.2 362 80.4
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.6e-171 606.3 364 80.5
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-171 606.3 362 81.5
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.0e-171 605.9 362 81.2
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-171 605.9 362 81.2
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.6e-171 605.5 365 81.6
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 3.5e-171 605.1 362 80.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.5e-171 605.1 362 81.2
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.9e-171 604.4 365 81.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.7e-171 604.0 362 80.9
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 7.7e-171 604.0 368 78.5
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 7.7e-171 604.0 358 81.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.9e-170 602.1 363 80.4
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.5e-170 600.5 359 80.8
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 2.5e-169 599.0 365 78.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.5e-169 597.8 360 79.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.5e-169 597.8 362 80.1
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.2e-169 597.4 362 78.7
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.6e-168 596.3 360 78.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.1e-168 595.9 359 79.4
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-168 595.9 365 78.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.7e-168 595.5 365 78.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.7e-168 595.5 365 78.4
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 5.2e-167 591.3 360 79.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.7e-167 590.9 416 72.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.8e-167 590.5 369 79.4
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.2e-166 590.1 361 78.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.5e-166 589.7 360 78.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 3.3e-166 588.6 360 80.0
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 7.5e-166 587.4 361 78.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.3e-165 586.6 357 79.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.7e-165 586.3 360 78.6
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.2e-165 585.9 360 77.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.8e-164 582.8 360 76.9
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.4e-164 582.4 360 78.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 4.1e-164 581.6 389 73.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.1e-164 581.6 360 78.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 7.0e-164 580.9 360 78.9
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 7.0e-164 580.9 360 78.9
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.6e-163 579.7 360 78.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.7e-163 578.9 359 78.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.0e-162 577.0 359 76.0
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.3e-162 576.6 361 76.5
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.3e-162 576.6 359 77.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.9e-162 575.5 361 76.7
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 6.5e-162 574.3 360 78.1
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.5e-161 573.2 367 74.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.5e-161 572.4 366 74.9
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.5e-161 572.4 360 78.1
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 4.2e-161 571.6 361 76.7
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-160 569.7 454 65.2
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.7e-160 568.9 366 76.0
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.7e-160 568.2 360 76.1
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.7e-160 568.2 361 74.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 6.1e-160 567.8 438 67.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 8.0e-160 567.4 454 63.9
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.0e-159 567.0 360 76.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.2e-159 564.7 361 75.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.5e-158 563.1 361 74.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.6e-154 547.4 331 80.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.5e-153 545.8 374 69.8
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 4.7e-152 541.6 362 71.5
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-150 536.6 359 71.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 6.3e-149 531.2 361 69.8
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-148 529.6 358 70.1
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.0e-148 527.7 360 70.6
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.0e-146 523.9 354 71.2
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-145 520.0 360 68.9
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 9.5e-145 517.3 356 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.1e-144 516.2 357 66.7
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-141 506.9 387 68.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-140 501.9 362 65.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 3.0e-138 495.7 520 52.1
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.2e-136 490.3 274 86.5
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.6e-136 490.0 360 63.1
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.4e-133 478.0 357 62.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.1e-127 460.7 270 82.6
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.9e-125 451.8 345 68.1
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 9.2e-124 447.6 255 83.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.1e-119 432.6 385 55.6
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 8.4e-117 424.5 277 75.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 8.7e-106 387.9 347 57.1
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.2e-100 369.4 381 49.9
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.2e-100 369.0 349 53.0
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.4e-95 354.0 306 57.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.3e-90 337.4 201 81.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 3.1e-87 326.2 226 69.5
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.0e-82 311.2 271 60.1
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 4.5e-78 295.8 162 84.6
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-76 290.8 180 78.9
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 3.6e-75 286.2 164 81.1
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-73 281.2 179 73.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.9e-68 263.8 184 67.9
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.5e-65 254.2 355 43.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 3.0e-58 229.9 176 61.4
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.6e-54 216.9 118 89.0
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 7.5e-49 198.7 170 60.6
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-43 180.6 106 77.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.4e-34 151.4 107 70.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.0e-34 150.2 89 79.8
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.4e-31 141.4 89 77.5
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 6.1e-27 125.9 210 39.5
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.1e-19 100.9 112 53.6
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.8e-18 97.8 77 59.7
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 8.9e-18 95.5 62 67.7
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.9e-18 95.5 232 29.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 4.4e-17 93.2 55 76.4
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.8e-17 92.0 83 59.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 9.2e-15 85.5 48 79.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 3.9e-13 80.1 47 74.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.9e-07 61.2 74 44.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 6.0e-06 56.2 32 81.2
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.8e-06 55.8 43 55.8


User provided reference genes

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