Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 1.8e-64 249.2 135 100.0
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 1.6e-41 172.9 137 73.0
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.1e-40 170.2 130 73.1
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.4e-40 169.9 135 71.9
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 1.8e-40 169.5 123 75.6
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 5.2e-40 167.9 125 74.4
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 5.2e-40 167.9 123 74.8
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 8.9e-40 167.2 120 75.0
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 1.2e-39 166.8 115 81.7
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 2.0e-39 166.0 125 76.0
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 2.6e-39 165.6 115 77.4
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 2.6e-39 165.6 135 69.6
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 2.6e-39 165.6 122 76.2
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 2.6e-39 165.6 137 71.5
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 3.4e-39 165.2 135 69.6
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 9.9e-39 163.7 137 71.5
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 1.3e-38 163.3 125 73.6
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 1.3e-38 163.3 123 76.4
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 2.2e-38 162.5 124 72.6
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 2.9e-38 162.2 125 73.6
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.9e-38 162.2 120 74.2
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 2.9e-38 162.2 124 73.4
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 2.9e-38 162.2 133 71.4
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 6.4e-38 161.0 132 71.2
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 1.1e-37 160.2 128 72.7
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 1.9e-37 159.5 121 71.9
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 1.9e-37 159.5 130 72.3
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 2.4e-37 159.1 127 72.4
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 2.4e-37 159.1 124 71.8
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 3.2e-37 158.7 129 72.1
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 3.2e-37 158.7 124 71.8
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 3.2e-37 158.7 125 69.6
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 4.1e-37 158.3 137 67.9
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 4.1e-37 158.3 115 77.4
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 5.4e-37 157.9 126 70.6
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 7.1e-37 157.5 129 71.3
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 7.1e-37 157.5 124 71.0
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 7.1e-37 157.5 137 67.9
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 7.1e-37 157.5 137 67.9
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 1.6e-36 156.4 123 72.4
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 1.6e-36 156.4 127 70.9
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.1e-36 156.0 129 69.8
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 2.1e-36 156.0 127 72.4
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.7e-36 155.6 114 74.6
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 2.7e-36 155.6 120 74.2
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 3.5e-36 155.2 116 75.0
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 3.5e-36 155.2 115 74.8
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 3.5e-36 155.2 115 74.8
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 4.6e-36 154.8 125 70.4
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 6.0e-36 154.5 124 70.2
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 7.8e-36 154.1 116 72.4
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 7.8e-36 154.1 139 66.2
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 7.8e-36 154.1 113 76.1
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 1.0e-35 153.7 138 66.7
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 1.0e-35 153.7 138 66.7
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 1.0e-35 153.7 123 69.9
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 1.3e-35 153.3 138 66.7
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 1.3e-35 153.3 138 66.7
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 1.3e-35 153.3 138 66.7
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.3e-35 153.3 114 73.7
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 1.7e-35 152.9 124 70.2
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 1.7e-35 152.9 105 77.1
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 2.3e-35 152.5 133 69.2
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 3.9e-35 151.8 123 69.1
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 5.1e-35 151.4 124 68.5
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 5.1e-35 151.4 124 68.5
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 6.6e-35 151.0 115 72.2
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 6.6e-35 151.0 145 63.4
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 8.6e-35 150.6 108 77.8
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 8.6e-35 150.6 108 77.8
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 8.6e-35 150.6 124 69.4
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 1.1e-34 150.2 122 71.3
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 1.1e-34 150.2 116 71.6
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 1.5e-34 149.8 147 63.9
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 4.3e-34 148.3 121 69.4
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 4.3e-34 148.3 117 70.9
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 4.3e-34 148.3 121 69.4
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 7.3e-34 147.5 121 68.6
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 9.6e-34 147.1 136 64.0
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 1.2e-33 146.7 113 74.3
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 1.2e-33 146.7 113 72.6
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 4.7e-33 144.8 102 79.4
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 8.1e-33 144.1 102 75.5
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 2.4e-32 142.5 109 71.6
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 3.1e-32 142.1 131 63.4
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 1.7e-30 136.3 137 63.5
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 2.9e-30 135.6 118 66.9
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 3.8e-30 135.2 105 72.4
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 1.1e-29 133.7 107 71.0
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 7.1e-29 131.0 114 67.5
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 9.3e-29 130.6 125 60.8
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 2.1e-28 129.4 109 68.8
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 1.7e-27 126.3 118 58.5
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 1.7e-27 126.3 111 65.8
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 5.1e-27 124.8 111 64.9
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 6.6e-27 124.4 107 67.3
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.1e-26 123.6 107 66.4
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 1.1e-24 117.1 97 67.0
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 2.6e-23 112.5 123 52.8
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 7.6e-23 110.9 86 73.3
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 1.0e-19 100.5 74 71.6
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-15 86.7 109 40.4
Mapoly0007s0266 Marchantia polymorpha HOM05D007302 ORTHO05D009191 7.6e-15 84.3 111 44.1
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 9.9e-15 84.0 68 64.7
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 1.3e-14 83.6 103 43.7
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 3.2e-13 79.0 95 54.7
MD05G1005700 Malus domestica HOM05D007302 ORTHO05D009191 1.4e-08 63.5 45 77.8
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 5.8e-07 58.2 54 51.9


User provided reference genes

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