Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 5.5e-259 897.1 456 100.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.6e-202 708.4 456 79.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.1e-201 705.3 456 77.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.4e-200 701.8 450 78.4
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.3e-199 699.9 450 78.9
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-198 696.0 456 76.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 4.2e-198 694.9 456 77.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.7e-197 692.2 456 76.1
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.3e-196 689.1 456 77.2
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 8.7e-196 687.2 470 74.0
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 7.3e-195 684.1 456 75.9
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.4e-193 679.1 450 75.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.2e-190 668.3 479 70.8
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.6e-189 664.8 456 73.0
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.3e-188 662.5 456 73.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 7.4e-187 657.5 449 71.9
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.8e-186 654.8 456 73.9
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.2e-186 654.4 456 72.6
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.1e-185 653.7 453 72.2
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.0e-185 651.7 438 73.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 9.0e-185 650.6 451 73.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.5e-184 648.3 449 72.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.5e-184 648.3 425 76.7
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 7.6e-184 647.5 458 71.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.8e-183 645.2 453 72.6
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.8e-183 645.2 453 72.2
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.9e-183 644.8 448 72.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 6.4e-183 644.4 456 72.4
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 8.4e-183 644.0 454 72.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.9e-182 642.9 453 72.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-182 642.5 453 72.2
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.2e-182 641.7 453 70.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.2e-181 640.2 454 70.0
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.1e-181 639.4 457 70.5
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-180 636.0 457 70.9
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-180 636.0 457 70.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 6.7e-180 634.4 445 71.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 8.7e-180 634.0 473 70.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 9.6e-179 630.6 445 70.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 9.6e-179 630.6 458 71.0
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.3e-178 630.2 451 71.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 8.2e-178 627.5 418 75.8
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.1e-177 627.1 463 68.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.4e-177 626.7 451 72.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.1e-177 625.5 453 69.8
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.0e-177 624.0 457 69.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.6e-176 622.5 458 69.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.6e-176 622.5 453 68.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.5e-176 621.7 453 69.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.5e-176 621.7 456 70.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 5.8e-176 621.3 478 67.8
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.8e-176 621.3 478 67.8
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.8e-176 621.3 453 69.5
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.9e-175 618.2 449 69.0
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.9e-174 616.3 451 71.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 9.3e-174 614.0 451 70.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.2e-173 613.6 451 69.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.6e-173 613.2 454 67.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.1e-173 612.8 451 69.0
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.6e-173 611.7 451 69.2
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 4.6e-173 611.7 466 67.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 6.0e-173 611.3 455 67.5
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.0e-172 610.5 455 67.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-172 610.5 455 67.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.8e-172 609.8 449 67.7
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.8e-172 609.8 454 66.5
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.3e-172 609.4 455 67.0
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.3e-172 609.4 451 68.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.0e-172 609.0 449 67.9
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-172 608.6 455 67.0
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 3.9e-172 608.6 452 68.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.7e-172 607.8 455 67.0
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 8.7e-172 607.4 451 67.8
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 8.7e-172 607.4 451 67.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.9e-171 606.3 449 68.6
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.3e-171 605.5 455 67.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 7.4e-171 604.4 451 67.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.3e-170 603.6 457 68.9
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.8e-170 602.4 455 66.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.7e-170 602.1 444 68.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-169 599.7 452 67.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 5.3e-169 598.2 404 74.0
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.5e-168 596.7 453 67.8
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.5e-168 596.7 429 71.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.5e-168 596.7 451 67.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.5e-168 596.7 460 65.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.0e-168 596.3 452 68.1
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.6e-168 595.9 550 58.5
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.6e-168 595.9 455 66.2
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 4.5e-168 595.1 452 67.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.5e-168 595.1 453 67.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-167 593.2 453 67.3
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.9e-167 592.4 454 66.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 6.5e-167 591.3 482 63.3
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 8.5e-167 590.9 444 68.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.5e-166 589.3 476 63.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.5e-166 589.3 460 65.7
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.2e-166 589.0 487 64.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.2e-166 588.6 453 67.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 5.5e-166 588.2 454 67.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 7.2e-166 587.8 451 66.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 2.7e-165 585.9 391 74.4
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.9e-164 582.0 456 66.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.7e-163 577.4 476 63.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.1e-161 572.4 453 64.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.7e-159 566.6 477 62.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.6e-157 560.1 390 71.0
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.6e-157 558.5 410 70.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.8e-156 556.6 484 59.9
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.3e-155 552.4 403 70.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.8e-154 549.3 450 61.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.4e-153 546.2 456 62.1
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.3e-153 545.0 389 70.4
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.6e-149 532.3 444 60.6
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.4e-147 525.4 444 60.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 7.4e-147 524.6 446 61.0
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 4.4e-139 498.8 435 58.9
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-135 487.3 455 55.2
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-134 484.2 455 54.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.2e-133 480.7 455 54.3
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.1e-133 478.4 354 69.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 5.2e-132 475.3 452 54.0
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 9.8e-131 471.1 443 54.9
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.8e-130 469.5 458 53.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.2e-126 455.7 389 59.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.1e-118 431.0 447 54.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.9e-118 430.3 443 57.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 5.6e-118 428.7 278 75.5
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 5.8e-115 418.7 319 69.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.0e-112 408.7 456 50.4
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 7.3e-102 375.2 252 71.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.3e-102 375.2 399 52.9
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.9e-95 352.8 267 68.9
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.1e-95 352.4 454 45.2
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.4e-89 333.6 290 60.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 6.9e-76 288.9 188 75.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 6.7e-71 272.3 313 50.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 7.6e-67 258.8 456 38.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.4e-65 253.8 158 81.0
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.9e-57 227.6 129 81.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 8.7e-55 218.8 173 62.4
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.1e-52 210.3 158 67.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.7e-50 204.5 194 53.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.8e-42 176.8 135 68.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 4.2e-41 173.3 125 68.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.0e-38 164.5 121 70.2
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.0e-35 154.5 118 68.6
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-34 151.4 94 77.7
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 7.7e-27 125.9 112 58.9
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.7e-26 124.8 77 76.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.3e-22 110.5 99 52.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.7e-19 100.9 81 58.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 4.0e-15 87.0 63 71.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 9.8e-14 82.4 60 70.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 9.1e-12 75.9 41 80.5
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.9e-09 68.2 46 69.6
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.5e-09 66.6 43 72.1
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 3.4e-06 57.4 37 78.4


User provided reference genes

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