Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g26780 Coffea canephora HOM05D008109 ORTHO05D009894 8.3e-64 246.9 127 100.0
Cc02_g26790 Coffea canephora HOM05D008109 ORTHO05D009894 5.6e-60 234.2 146 86.3
CiPaw.13G000700 Carya illinoinensis HOM05D008109 ORTHO05D009894 4.8e-19 98.2 146 47.9
Cfa010699 Carpinus fangiana HOM05D008109 ORTHO05D009894 8.2e-19 97.4 138 50.7
Nitab4.5_0004375g0040 Nicotiana tabacum HOM05D008109 ORTHO05D009894 1.4e-18 96.7 125 49.6
Haze_03277 Corylus avellana HOM05D008109 ORTHO05D009894 1.8e-18 96.3 140 52.9
Dinv43946 Davidia involucrata HOM05D008109 ORTHO05D009894 2.4e-18 95.9 135 48.1
PGSC0003DMG400015658 Solanum tuberosum HOM05D008109 ORTHO05D009894 9.0e-18 94.0 115 53.0
Duzib235G0400 Durio zibethinus HOM05D008109 ORTHO05D009894 1.7e-16 89.7 147 44.2
Hma1.2p1_0541F.1_g174770 Hydrangea macrophylla HOM05D008109 ORTHO05D009894 2.2e-16 89.4 147 46.9
Duzib192G0509 Durio zibethinus HOM05D008109 ORTHO05D009894 1.4e-15 86.7 152 46.7
Peaxi162Scf01343g00014 Petunia axillaris HOM05D008109 ORTHO05D009894 1.9e-15 86.3 75 62.7
Solyc06g051220.1 Solanum lycopersicum HOM05D008109 ORTHO05D009894 2.5e-15 85.9 125 50.4
Nitab4.5_0000266g0110 Nicotiana tabacum HOM05D008109 ORTHO05D009894 3.2e-15 85.5 131 46.6
Gohir.A05G110700 Gossypium hirsutum HOM05D008109 ORTHO05D009894 4.2e-15 85.1 146 43.2
vmacro22469 Vaccinium macrocarpon HOM05D008109 ORTHO05D009894 4.2e-15 85.1 141 49.6
QL04p002011 Quercus lobata HOM05D008109 ORTHO05D009894 2.1e-14 82.8 132 47.7
Gorai.009G115400 Gossypium raimondii HOM05D008109 ORTHO05D009894 6.7e-13 77.8 145 39.3
Thecc.06G002700 Theobroma cacao HOM05D008109 ORTHO05D009894 6.7e-13 77.8 159 39.0
Gohir.D05G111100 Gossypium hirsutum HOM05D008109 ORTHO05D009894 8.8e-13 77.4 145 40.0
CAN.G103.18 Capsicum annuum HOM05D008109 ORTHO05D009894 1.5e-12 76.6 119 48.7
MSTRG.28106 Avicennia marina HOM05D008109 ORTHO05D009894 1.9e-12 76.3 121 39.7
Nn7g35907 Nelumbo nucifera HOM05D008109 ORTHO05D009894 2.5e-12 75.9 170 38.8
Gorai.010G246800 Gossypium raimondii HOM05D008109 ORTHO05D009894 4.3e-12 75.1 160 39.4
Gohir.A06G202200 Gossypium hirsutum HOM05D008109 ORTHO05D009894 5.7e-12 74.7 160 40.0
Gohir.D06G219700 Gossypium hirsutum HOM05D008109 ORTHO05D009894 5.7e-12 74.7 160 39.4
TPR.G10815 Trifolium pratense HOM05D008109 ORTHO05D009894 5.7e-12 74.7 150 40.7
Lsat_1_v5_gn_1_89920 Lactuca sativa HOM05D008109 ORTHO05D009894 4.8e-11 71.6 137 39.4
TAR623G1474 Trochodendron aralioides HOM05D008109 ORTHO05D009894 6.3e-11 71.2 76 57.9
DCAR_029584 Daucus carota HOM05D008109 ORTHO05D009894 1.8e-10 69.7 143 39.9
MELO3C023500.2 Cucumis melo HOM05D008109 ORTHO05D009894 2.4e-10 69.3 141 41.8
Medtr2g062280 Medicago truncatula HOM05D008109 ORTHO05D009894 2.4e-10 69.3 147 38.1
AUR62031557 Chenopodium quinoa HOM05D008109 ORTHO05D009894 3.1e-10 68.9 152 38.2
Nn2g15812 Nelumbo nucifera HOM05D008109 ORTHO05D009894 3.1e-10 68.9 181 35.9
Nitab4.5_0003123g0020 Nicotiana tabacum HOM05D008109 ORTHO05D009894 5.3e-10 68.2 96 46.9
Prupe.2G001600 Prunus persica HOM05D008109 ORTHO05D009894 5.3e-10 68.2 166 34.9
TWI09G0246 Tripterygium wilfordii HOM05D008109 ORTHO05D009894 5.3e-10 68.2 134 43.3
Ciclev10032944m.g Citrus clementina HOM05D008109 ORTHO05D009894 9.1e-10 67.4 164 38.4
AUR62012433 Chenopodium quinoa HOM05D008109 ORTHO05D009894 1.2e-09 67.0 141 38.3
Dinv43505 Davidia involucrata HOM05D008109 ORTHO05D009894 1.5e-09 66.6 109 48.6
Lalb_Chr25g0283751 Lupinus albus HOM05D008109 ORTHO05D009894 2.6e-09 65.9 159 35.2
PGR031G1804 Punica granatum HOM05D008109 ORTHO05D009894 4.5e-09 65.1 165 38.8
Phvul.005G042700 Phaseolus vulgaris HOM05D008109 ORTHO05D009894 1.0e-08 63.9 159 35.2
Potri.001G232200 Populus trichocarpa HOM05D008109 ORTHO05D009894 1.0e-08 63.9 179 35.8
CsaV3_7G031540 Cucumis sativus L. HOM05D008109 ORTHO05D009894 1.3e-08 63.5 143 39.9
Oeu024942.1 Olea europaea HOM05D008109 ORTHO05D009894 1.3e-08 63.5 138 37.7
Aqoxy1G00435 Aquilegia oxysepala HOM05D008109 ORTHO05D009894 2.2e-08 62.8 167 34.1
Lj3g0014063 Lotus japonicus HOM05D008109 ORTHO05D009894 2.9e-08 62.4 172 33.1
Oeu032778.1 Olea europaea HOM05D008109 ORTHO05D009894 5.0e-08 61.6 125 36.8
Sabra16G0138900 Salix brachista HOM05D008109 ORTHO05D009894 6.5e-08 61.2 174 33.3
Nitab4.5_0000050g0160 Nicotiana tabacum HOM05D008109 ORTHO05D009894 1.1e-07 60.5 87 47.1
Ah.16g104750 Amaranthus hybridus HOM05D008109 ORTHO05D009894 1.4e-07 60.1 130 38.5
ClCG09G003640 Citrullus lanatus HOM05D008109 ORTHO05D009894 1.4e-07 60.1 152 37.5
Sc06g0000510 Simmondsia chinensis HOM05D008109 ORTHO05D009894 1.9e-07 59.7 147 38.1
Glyma.08G158700 Glycine max HOM05D008109 ORTHO05D009894 4.2e-07 58.5 70 50.0
VMungo1080G1374 Vigna mungo HOM05D008109 ORTHO05D009894 4.2e-07 58.5 161 32.9
MBI01_g20511_MAGBIO Magnolia biondii HOM05D011216 ORTHO05D009894 5.5e-07 58.2 145 35.9
Atru.chr11.2715 Acer truncatum HOM05D008109 ORTHO05D009894 1.2e-06 57.0 177 32.8
Potri.009G024700 Populus trichocarpa HOM05D008109 ORTHO05D009894 1.2e-06 57.0 190 33.7
Sp4g14290 Schrenkiella parvula HOM05D011216 ORTHO05D009894 1.2e-06 57.0 142 35.2
Glyma.15G267600 Glycine max HOM05D008109 ORTHO05D009894 2.7e-06 55.8 68 48.5
THA.LOC104815879 Tarenaya hassleriana HOM05D011216 ORTHO05D009894 4.7e-06 55.1 165 32.1
Sed0011083 Sechium edule HOM05D008109 ORTHO05D009894 7.9e-06 54.3 149 38.3


User provided reference genes

Program Settings