Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.6e-199 699.1 336 100.0
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 5.5e-131 471.5 301 74.8
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.0e-129 467.2 300 74.3
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.9e-129 465.3 280 76.4
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 8.8e-129 464.2 280 76.1
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.5e-128 463.4 303 73.3
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 3.3e-128 462.2 294 74.5
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 4.4e-128 461.8 341 67.2
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 4.4e-128 461.8 279 76.0
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 7.4e-128 461.1 293 75.4
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 9.7e-128 460.7 362 66.0
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.7e-127 459.9 308 72.1
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.8e-127 459.1 291 73.5
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 6.3e-127 458.0 298 73.8
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 6.3e-127 458.0 313 71.9
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.4e-126 456.8 301 71.8
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.4e-126 456.8 283 76.0
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 1.8e-126 456.4 313 71.6
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 4.1e-126 455.3 313 71.2
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 5.3e-126 454.9 291 72.5
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 5.3e-126 454.9 287 76.3
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 7.0e-126 454.5 292 73.6
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 3.5e-125 452.2 281 75.4
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 3.5e-125 452.2 337 65.3
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 4.5e-125 451.8 293 73.7
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.5e-125 451.8 299 71.6
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 4.5e-125 451.8 296 73.6
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 1.0e-124 450.7 292 73.3
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 6.5e-124 448.0 339 65.2
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.1e-123 447.2 310 71.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 3.2e-123 445.7 287 74.9
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.2e-122 443.7 282 74.1
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.2e-122 443.7 294 71.4
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 2.1e-122 443.0 310 70.3
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 3.6e-122 442.2 297 71.4
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.6e-122 442.2 309 68.0
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 8.0e-122 441.0 309 68.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.8e-121 439.9 298 69.5
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.8e-121 439.9 285 73.3
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 8.8e-121 437.6 312 69.2
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 7.5e-120 434.5 280 73.2
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 9.7e-120 434.1 332 64.2
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 1.3e-119 433.7 286 72.7
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.7e-119 433.3 272 75.7
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.4e-118 429.5 311 67.2
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 3.1e-118 429.1 311 68.2
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.2e-117 427.2 276 72.8
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 2.7e-117 426.0 294 69.7
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 3.5e-117 425.6 295 68.1
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 3.5e-117 425.6 295 70.2
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.3e-116 423.7 314 67.2
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.7e-116 423.3 315 66.3
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.7e-116 423.3 444 53.2
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 2.9e-116 422.5 315 66.7
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 8.5e-116 421.0 315 66.7
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.9e-115 419.9 288 70.1
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 3.2e-115 419.1 314 65.9
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.2e-115 419.1 302 70.5
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 3.2e-115 419.1 316 66.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 3.6e-114 415.6 291 69.8
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.4e-113 413.7 312 66.0
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 1.4e-113 413.7 286 68.9
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 3.0e-113 412.5 285 69.5
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 5.2e-113 411.8 285 69.8
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 8.8e-113 411.0 281 70.8
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 1.5e-112 410.2 321 65.1
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.0e-112 409.8 289 67.8
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 2.6e-112 409.5 318 63.5
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 5.7e-112 408.3 297 65.3
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.7e-111 406.8 341 60.1
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 1.7e-111 406.8 309 67.3
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 2.2e-111 406.4 279 68.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.8e-111 406.0 273 70.7
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.1e-110 404.1 291 68.0
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 9.1e-110 401.0 321 63.2
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.2e-109 400.6 271 71.2
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 2.7e-109 399.4 299 67.2
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.8e-102 376.7 295 61.4
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.0e-101 373.2 287 64.1
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 2.8e-98 362.8 318 55.0
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 3.4e-96 355.9 284 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 3.7e-95 352.4 300 55.3
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 5.4e-94 348.6 289 57.8
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 2.3e-92 343.2 323 58.5
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.1e-91 340.9 249 67.5
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 3.9e-84 315.8 308 51.6
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 4.3e-83 312.4 227 68.7
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 2.0e-80 303.5 221 69.7
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.9e-79 299.7 225 66.2
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 2.1e-77 293.5 217 65.0
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.5e-75 286.6 178 75.3
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 7.3e-75 285.0 192 72.4
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.8e-73 280.4 189 70.9
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 3.4e-72 276.2 167 77.2
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 5.1e-68 262.3 274 46.0
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 4.4e-64 249.2 271 51.3
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 5.8e-64 248.8 291 41.6
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.8e-63 246.1 178 66.3
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.0e-60 236.5 285 44.6
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.5e-56 224.2 161 66.5
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.4e-54 217.6 130 78.5
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.8e-52 210.7 179 60.9
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.6e-32 143.7 281 34.9
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 3.4e-32 143.3 73 79.5
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 1.7e-31 141.0 318 31.8
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.5e-30 137.1 79 75.9
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 1.4e-25 121.3 60 86.7
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 1.2e-24 118.2 323 27.9
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.1e-22 111.7 63 77.8
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 3.7e-18 96.7 136 41.9
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.1e-17 93.6 154 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 2.7e-13 80.5 229 27.1
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-11 72.8 68 45.6
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 1.7e-10 71.2 131 35.1
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 1.6e-08 64.7 350 22.9
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 2.5e-06 57.4 155 31.0


User provided reference genes

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