Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 3.5e-115 418.3 212 100.0
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-114 416.0 212 99.5
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 4.9e-101 371.3 232 85.3
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 7.6e-94 347.4 202 89.6
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 7.8e-91 337.4 189 92.6
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 6.9e-87 324.3 191 90.6
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.4e-76 288.1 202 73.3
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 6.0e-75 284.6 202 72.3
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.8e-74 283.1 202 73.3
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 7.4e-73 277.7 202 72.8
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 1.3e-72 276.9 202 72.8
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.3e-72 276.9 202 71.3
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 6.2e-72 274.6 202 71.3
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 1.1e-71 273.9 202 69.3
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.0e-71 271.9 202 71.3
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.0e-71 271.9 214 69.2
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 4.0e-71 271.9 202 68.8
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 6.9e-71 271.2 210 67.1
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 1.5e-70 270.0 202 68.8
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 2.6e-70 269.2 209 69.4
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 5.8e-70 268.1 202 68.8
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 5.8e-70 268.1 202 68.3
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 7.6e-70 267.7 197 70.1
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 7.6e-70 267.7 202 68.3
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 1.3e-69 266.9 202 68.3
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.7e-69 266.5 209 68.4
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.7e-69 266.5 209 68.4
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 2.9e-69 265.8 200 69.5
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 3.8e-69 265.4 209 67.9
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 4.9e-69 265.0 202 66.3
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 4.9e-69 265.0 202 69.8
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 4.9e-69 265.0 202 69.8
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 6.5e-69 264.6 202 68.8
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 1.4e-68 263.5 210 64.8
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 2.5e-68 262.7 202 67.8
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 3.2e-68 262.3 202 67.3
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 4.2e-68 261.9 203 69.5
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 4.2e-68 261.9 211 67.3
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 2.7e-67 259.2 201 66.7
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.5e-67 258.8 190 68.9
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 7.9e-67 257.7 134 96.3
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 7.9e-67 257.7 210 66.2
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.0e-66 257.3 219 63.5
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.0e-66 257.3 210 66.2
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 1.3e-66 256.9 211 63.5
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 3.9e-66 255.4 197 68.0
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.1e-66 255.0 219 61.6
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.5e-65 253.4 197 67.5
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.9e-65 253.1 219 61.2
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-65 252.7 202 65.8
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 4.3e-65 251.9 202 63.9
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 9.6e-65 250.8 219 61.2
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 9.6e-65 250.8 202 63.9
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 9.6e-65 250.8 202 65.3
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.3e-64 250.4 202 64.9
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.1e-64 249.6 197 67.5
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 2.8e-64 249.2 201 65.2
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 6.2e-64 248.1 202 65.3
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 8.2e-64 247.7 204 63.2
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 1.4e-63 246.9 205 64.4
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 2.4e-63 246.1 208 63.5
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 9.0e-63 244.2 185 68.6
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 9.0e-63 244.2 202 63.4
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 1.2e-62 243.8 207 62.3
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 2.6e-62 242.7 209 60.8
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 3.4e-62 242.3 202 62.4
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 4.5e-62 241.9 217 63.1
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 5.8e-62 241.5 209 61.7
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 5.8e-62 241.5 209 61.7
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.0e-61 240.7 202 62.9
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 1.3e-61 240.4 202 61.4
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 1.7e-61 240.0 209 61.2
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 2.9e-61 239.2 209 60.3
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 8.4e-61 237.7 205 62.4
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.1e-60 237.3 202 61.9
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 1.1e-60 237.3 197 64.0
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 2.5e-60 236.1 211 58.8
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.5e-60 236.1 222 58.1
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 2.5e-60 236.1 204 60.8
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 2.5e-60 236.1 203 63.1
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 4.2e-60 235.3 211 57.8
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 4.2e-60 235.3 204 60.8
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.1e-59 233.0 205 60.0
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.1e-59 233.0 203 62.6
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 4.6e-59 231.9 202 60.4
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 4.6e-59 231.9 202 61.9
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 6.1e-59 231.5 210 60.0
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 7.9e-59 231.1 185 64.9
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.0e-58 230.7 202 61.4
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.3e-58 230.3 241 53.5
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 5.1e-58 228.4 220 55.9
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 5.1e-58 228.4 201 59.2
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 6.7e-58 228.0 202 62.9
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 2.5e-57 226.1 202 60.4
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 3.3e-57 225.7 211 61.1
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 5.7e-57 224.9 202 60.9
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 5.7e-57 224.9 205 61.0
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 1.6e-56 223.4 202 60.9
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.6e-56 223.4 205 60.5
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 8.2e-56 221.1 202 60.9
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 1.1e-55 220.7 205 60.0
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.1e-55 220.7 198 61.6
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 9.0e-55 217.6 208 60.6
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 1.0e-53 214.2 217 54.8
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.3e-53 213.8 200 58.5
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 2.9e-53 212.6 203 58.1
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 6.5e-53 211.5 213 53.5
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 8.5e-53 211.1 204 56.9
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.1e-52 210.7 200 59.0
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.1e-52 210.7 197 59.4
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 3.2e-52 209.1 204 56.4
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 3.2e-52 209.1 204 56.4
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 2.1e-51 206.5 204 56.4
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 1.4e-50 203.8 187 59.9
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 1.4e-50 203.8 198 53.5
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 2.3e-50 203.0 157 67.5
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 5.1e-50 201.8 187 59.4
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 1.1e-49 200.7 114 88.6
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 4.8e-48 195.3 223 53.4
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 6.3e-48 194.9 203 54.2
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 1.8e-47 193.4 204 54.9
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 5.3e-47 191.8 214 55.1
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 3.4e-46 189.1 187 57.8
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 7.7e-46 188.0 157 65.0
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.9e-45 186.0 210 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 3.9e-42 175.6 181 51.4
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 5.1e-42 175.3 170 55.9
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 7.4e-41 171.4 203 48.3
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-40 170.2 84 100.0
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.2e-38 164.1 125 62.4
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 5.0e-37 158.7 188 45.2
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 2.1e-35 153.3 258 42.6
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 2.1e-35 153.3 202 45.5
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 4.7e-35 152.1 189 45.0
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 6.1e-35 151.8 194 50.5
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 5.2e-34 148.7 202 44.6
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 5.2e-34 148.7 202 44.6
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.6e-33 146.4 156 53.8
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 7.0e-31 138.3 132 53.0
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 2.9e-29 132.9 188 39.9
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 1.0e-26 124.4 115 57.4
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 2.8e-24 116.3 235 33.2
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 7.0e-23 111.7 117 51.3
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 3.8e-21 105.9 96 52.1
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 5.2e-18 95.5 113 50.4
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 2.2e-16 90.1 83 53.0
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-15 87.4 101 50.5
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-15 87.4 101 50.5
Dinv10096 Davidia involucrata HOM05D000361 ORTHO05D004243 5.9e-14 82.0 55 74.5
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 5.9e-14 82.0 71 62.0
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 7.7e-14 81.6 76 60.5
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 1.3e-13 80.9 88 54.5
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.7e-11 72.4 51 64.7
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 4.0e-10 69.3 54 63.0
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 1.7e-08 63.9 80 48.8
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 1.6e-06 57.4 130 29.2
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 1.6e-06 57.4 36 80.6


User provided reference genes

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