Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.0e-109 398.3 229 100.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 5.5e-98 361.3 229 91.3
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.2e-97 360.1 229 91.3
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.8e-96 356.3 229 91.3
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 3.9e-96 355.1 229 90.4
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.9e-96 355.1 230 90.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 5.1e-96 354.8 230 90.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.1e-96 354.8 229 90.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.1e-96 354.8 229 90.8
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-95 353.2 229 90.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.5e-95 352.4 229 89.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.5e-95 352.4 230 90.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.5e-95 352.4 230 90.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.5e-95 352.4 230 90.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 4.3e-95 351.7 229 90.4
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.6e-94 349.7 226 89.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 2.2e-94 349.4 229 89.5
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.8e-94 349.0 229 88.6
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.8e-94 349.0 229 90.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.1e-93 347.1 230 89.6
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.4e-93 345.9 228 87.7
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.1e-93 345.1 229 88.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 4.1e-93 345.1 232 88.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 4.1e-93 345.1 228 88.6
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 5.3e-93 344.7 229 88.2
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 5.3e-93 344.7 230 88.3
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 9.0e-93 344.0 230 88.3
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.6e-92 342.4 229 86.9
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.4e-92 342.0 230 87.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 4.5e-92 341.7 233 87.6
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.8
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.8e-91 338.6 229 88.6
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 5.0e-91 338.2 229 87.3
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 5.0e-91 338.2 229 87.8
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 8.5e-91 337.4 229 87.3
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 3.2e-90 335.5 229 86.5
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 2.7e-89 332.4 229 87.3
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.6e-89 332.0 229 86.5
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 87.3
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 86.9
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 7.9e-89 330.9 229 86.5
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 7.9e-89 330.9 229 86.0
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.0e-88 330.5 229 87.3
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.4e-88 330.1 229 86.9
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.4e-88 330.1 229 87.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 2.3e-88 329.3 194 97.4
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 3.0e-88 328.9 229 86.0
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.0e-88 328.9 229 85.6
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.0e-88 328.9 229 87.3
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 3.9e-88 328.6 236 84.7
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 6.7e-88 327.8 229 86.0
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 8.8e-88 327.4 229 86.0
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 8.8e-88 327.4 229 85.6
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 8.8e-88 327.4 229 86.0
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-87 327.0 229 85.6
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.5e-87 326.6 229 85.6
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.0e-87 326.2 203 93.1
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 2.0e-87 326.2 229 85.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 86.9
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 86.9
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 85.6
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 4.3e-87 325.1 228 86.4
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.3e-87 325.1 229 85.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 4.3e-87 325.1 229 86.0
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.3e-87 325.1 210 91.4
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 7.4e-87 324.3 228 86.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 7.4e-87 324.3 229 85.6
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 7.4e-87 324.3 269 75.5
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.7e-87 323.9 229 86.5
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-86 323.2 229 84.7
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.7e-86 323.2 229 86.0
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.8e-86 322.4 229 86.0
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 2.8e-86 322.4 229 84.7
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 3.7e-86 322.0 229 84.7
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.8e-86 321.6 229 83.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 4.8e-86 321.6 229 85.2
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 6.3e-86 321.2 229 83.8
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 8.2e-86 320.9 229 84.3
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 8.2e-86 320.9 229 84.3
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.1e-85 320.5 227 84.6
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.1e-85 320.5 226 85.0
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.8e-85 319.7 229 83.4
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.4e-85 319.3 229 83.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.3e-85 318.2 229 84.3
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.3e-85 318.2 229 84.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 6.9e-85 317.8 229 83.8
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 9.1e-85 317.4 228 85.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 9.1e-85 317.4 229 83.0
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 9.1e-85 317.4 229 83.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 9.1e-85 317.4 229 83.0
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-84 317.0 229 83.8
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-84 317.0 229 83.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-84 317.0 229 83.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-84 317.0 229 83.8
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.2e-84 317.0 229 83.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-84 316.2 229 84.3
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.0e-84 316.2 229 83.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 2.0e-84 316.2 228 84.2
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 83.0
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 82.1
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 4.5e-84 315.1 229 83.4
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 4.5e-84 315.1 229 83.4
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 4.5e-84 315.1 231 83.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 5.9e-84 314.7 229 83.8
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.9e-84 314.7 229 83.0
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 5.9e-84 314.7 229 82.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.7e-84 314.3 229 83.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.7e-84 314.3 229 83.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.0e-83 313.9 231 83.1
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.0e-83 313.9 231 83.1
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.0e-83 313.9 229 83.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-83 313.5 229 83.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-83 313.5 229 83.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.7e-83 313.2 229 83.4
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.9e-83 312.4 229 83.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 6.5e-83 311.2 231 82.7
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 8.5e-83 310.8 229 83.4
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.1e-82 310.5 229 80.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.2e-81 307.0 229 81.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.6e-81 306.6 287 62.0
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.7e-81 305.1 208 86.1
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.0e-80 302.4 231 81.4
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 3.9e-80 302.0 189 94.2
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.1e-80 301.6 185 94.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.1e-79 300.4 185 93.5
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.0e-79 299.7 184 95.7
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 3.3e-79 298.9 185 93.0
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 5.7e-79 298.1 229 79.5
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 9.7e-79 297.4 179 96.6
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 2.4e-77 292.7 197 89.3
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.2e-74 282.3 197 87.3
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 5.5e-74 281.6 235 76.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 7.2e-74 281.2 185 88.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.6e-73 280.0 168 97.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.0e-72 277.3 207 81.2
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 7.4e-71 271.2 187 85.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 9.7e-71 270.8 186 86.0
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.1e-69 265.8 197 83.2
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 7.0e-69 264.6 229 72.5
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 7.7e-68 261.2 169 89.9
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.9e-66 256.5 166 88.0
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.6e-65 253.4 164 90.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.0e-64 248.8 226 64.6
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.2e-64 248.4 209 74.2
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 5.7e-63 245.0 148 98.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.1e-61 239.2 183 79.8
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 7.0e-61 238.0 148 92.6
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.7e-59 233.4 229 65.5
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 9.4e-58 227.6 178 79.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.6e-57 225.7 178 71.3
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.8e-56 223.4 136 97.8
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 2.2e-54 216.5 159 71.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.1e-53 214.2 185 70.3
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.4e-53 213.0 244 56.6
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.7e-51 206.8 153 82.4
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.9
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 8.3e-46 188.0 138 68.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.8e-45 186.8 120 80.0
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.9e-43 179.1 152 66.4
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 6.6e-35 151.8 123 66.7
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.6e-33 146.0 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 3.2e-29 132.9 229 42.4
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 6.2e-25 118.6 227 38.3
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.6e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.5e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.6e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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