Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 7.4e-92 340.5 169 100.0
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.3e-75 286.6 164 87.2
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.6e-70 268.5 164 81.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.1e-70 267.7 164 83.5
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.4e-69 266.5 164 82.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-67 260.0 167 77.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.7e-67 258.5 169 75.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 8.2e-67 257.3 167 77.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.4e-66 256.5 167 74.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.8e-66 256.1 163 77.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.4e-66 255.8 165 77.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.5e-65 253.1 164 76.2
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.6e-65 252.3 164 76.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.6e-65 252.3 164 76.8
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.5e-65 251.5 163 75.5
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 7.7e-65 250.8 164 73.8
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 7.7e-65 250.8 163 74.8
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.0e-64 250.4 167 74.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.0e-64 250.4 163 77.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.3e-64 250.0 163 74.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.2e-64 249.2 164 75.6
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.2e-64 249.2 164 76.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 3.8e-64 248.4 164 75.0
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.0e-64 248.1 163 74.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.5e-63 245.7 164 72.6
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.5e-63 245.7 164 74.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.2e-63 245.4 163 73.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.2e-63 245.0 164 76.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.2e-63 245.0 163 73.0
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 5.5e-63 244.6 167 70.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 7.2e-63 244.2 163 73.6
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-62 243.4 165 73.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.6e-62 243.0 162 74.7
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 2.7e-62 242.3 163 74.2
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.0e-61 240.4 166 72.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.4e-61 240.0 164 73.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.8e-61 239.6 164 75.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 5.2e-61 238.0 163 73.6
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.7e-61 237.7 165 73.3
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 8.8e-61 237.3 168 72.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.5e-60 236.5 162 74.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.6e-60 235.7 163 71.8
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 5.7e-60 234.6 165 72.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 5.7e-60 234.6 165 72.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.4e-60 234.2 162 75.3
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.3e-59 233.4 167 73.1
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-59 233.4 158 75.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.8e-59 232.3 163 68.1
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.7e-59 231.9 165 70.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 6.3e-59 231.1 162 69.8
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.3e-59 231.1 165 72.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.2e-59 230.7 167 71.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.1e-58 230.3 167 70.7
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.1e-58 230.3 163 71.8
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.1e-58 230.3 155 75.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.8e-58 229.6 167 71.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.8e-58 229.6 168 68.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.4e-58 229.2 164 72.0
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.1e-58 228.8 171 71.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.1e-58 228.4 167 70.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.3e-58 228.0 163 68.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 7.0e-58 227.6 169 68.0
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 7.0e-58 227.6 164 71.3
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 9.1e-58 227.3 163 68.1
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.1e-58 227.3 161 67.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.6e-57 226.5 162 67.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-57 226.5 163 68.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-57 226.1 163 68.1
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 166 69.3
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.6e-57 225.7 163 68.1
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.2e-56 222.6 163 69.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.9e-56 222.2 166 66.3
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 4.2e-55 218.4 162 69.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.2e-55 217.6 163 70.6
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.2e-54 216.9 168 64.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.6e-54 216.5 158 70.3
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.6e-54 216.5 163 70.6
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 8.0e-54 214.2 164 69.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 8.0e-54 214.2 164 70.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.8e-53 213.0 163 69.3
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-53 213.0 163 69.3
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.0e-53 212.2 163 69.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.0e-53 212.2 163 70.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.2e-53 211.5 166 65.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.7e-53 211.1 167 66.5
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 8.8e-53 210.7 162 64.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 7.5e-52 207.6 166 63.9
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.2e-51 206.1 166 62.7
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.2e-51 206.1 166 63.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.3e-51 204.1 166 62.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.1e-50 203.8 166 62.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.4e-50 202.6 164 64.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.1e-50 202.2 157 65.0
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-49 199.9 168 62.5
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.6e-49 199.9 168 62.5
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-49 199.5 168 62.5
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.0e-49 199.5 166 63.9
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.0e-49 199.5 153 68.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-49 199.1 168 62.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.5e-49 198.7 167 62.3
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 4.5e-49 198.4 167 61.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.5e-49 198.4 131 74.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.0e-48 197.2 168 61.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.0e-48 197.2 157 63.1
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.8e-48 195.3 168 59.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.5e-48 194.1 164 64.0
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.2e-47 192.2 126 72.2
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-46 189.9 167 62.9
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.3e-45 186.0 156 61.5
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 3.0e-45 185.7 125 72.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.8e-43 178.3 166 56.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.1e-42 175.3 135 68.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-41 173.7 166 56.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.2e-41 173.7 166 56.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-41 173.7 166 59.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.7e-41 171.0 166 58.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.7e-41 171.0 127 72.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.3e-40 169.5 166 57.8
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 6.6e-40 167.9 162 56.2
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 8.6e-40 167.5 165 54.5
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.5e-39 164.9 128 64.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.2e-38 163.7 124 62.1
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.2e-38 163.7 166 54.8
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.2e-35 152.9 130 60.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-34 150.2 112 65.2
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.4e-34 148.3 161 46.0
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.6e-33 146.7 156 48.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.6e-33 146.7 169 53.3
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 7.8e-33 144.4 97 70.1
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.0e-32 144.1 168 50.6
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.0e-32 144.1 155 51.6
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.3e-32 142.9 119 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.9e-32 142.5 158 46.2
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.0e-32 141.7 131 51.1
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 6.6e-32 141.4 170 48.8
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.1e-31 140.6 117 58.1
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.9e-27 125.9 138 44.9
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.9e-27 125.9 88 69.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.9e-27 125.9 121 47.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.4e-26 121.7 164 39.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.8e-25 117.9 77 75.3
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.3e-23 112.5 74 70.3
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 7.3e-23 111.3 147 44.2
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.5e-23 110.9 163 44.8
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.0e-20 103.2 82 57.3
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.4e-18 95.1 61 78.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.2e-18 94.4 66 74.2
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.7e-17 92.8 64 76.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.9e-15 86.7 80 56.2
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.3e-15 85.9 100 42.0
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 3.3e-15 85.9 68 69.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 6.2e-14 81.6 81 55.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 8.1e-14 81.3 74 48.6
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-13 80.9 115 40.9
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-12 77.4 61 67.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.6e-12 76.3 62 66.1
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.6e-12 76.3 57 70.2
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.6e-12 76.3 57 70.2
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.7e-11 72.4 53 69.8
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.7e-09 66.2 80 41.2
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 4.6e-09 65.5 116 39.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-09 65.1 89 49.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.0e-09 65.1 63 42.9
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 7.8e-09 64.7 111 31.5
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.7e-08 63.5 44 68.2
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 2.5e-07 59.7 101 32.7
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.5e-07 59.7 61 57.4


User provided reference genes

Program Settings