Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 2.5e-121 440.7 808 100.0
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 1.2e-70 272.3 205 62.9
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 2.0e-70 271.6 206 62.1
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 1.7e-69 268.5 206 64.1
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 3.6e-67 260.8 208 63.0
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 1.8e-66 258.5 205 61.5
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.8e-66 258.5 206 61.7
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 2.3e-66 258.1 206 60.7
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 6.7e-66 256.5 206 59.2
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 6.7e-66 256.5 206 59.2
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 8.7e-66 256.1 206 61.2
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 1.1e-65 255.8 194 63.9
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 4.3e-65 253.8 206 59.7
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 8.2e-64 249.6 206 61.7
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 1.8e-63 248.4 205 58.0
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 2.4e-63 248.1 179 67.0
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 4.1e-63 247.3 205 57.1
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 4.1e-63 247.3 205 58.5
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 9.1e-63 246.1 199 61.8
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 1.2e-62 245.7 180 66.1
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 1.5e-62 245.4 206 58.3
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 3.4e-62 244.2 205 57.1
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 7.7e-62 243.0 206 57.8
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.3e-61 242.3 206 56.8
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 2.9e-61 241.1 205 57.1
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 3.8e-61 240.7 181 64.6
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.8e-61 240.7 205 58.0
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 8.5e-61 239.6 206 57.3
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 2.5e-60 238.0 207 58.0
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 2.5e-60 238.0 203 57.1
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 4.2e-60 237.3 181 63.5
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 4.2e-60 237.3 206 54.4
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 4.2e-60 237.3 181 61.9
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.5e-60 236.9 181 63.0
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 5.5e-60 236.9 181 63.5
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 7.2e-60 236.5 181 62.4
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 7.2e-60 236.5 205 59.5
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 1.2e-59 235.7 207 55.1
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 1.6e-59 235.3 175 65.7
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 2.1e-59 235.0 204 55.4
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 3.6e-59 234.2 208 54.8
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 7.9e-59 233.0 206 54.9
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 1.4e-58 232.3 206 56.3
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 8.8e-58 229.6 204 53.9
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 1.1e-57 229.2 207 55.6
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 2.0e-57 228.4 206 53.9
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 4.4e-57 227.3 180 62.8
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 5.7e-57 226.9 206 53.4
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 5.7e-57 226.9 210 54.8
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 1.4e-55 222.2 206 53.9
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 4.1e-55 220.7 170 62.4
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 4.1e-55 220.7 181 61.3
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 4.1e-55 220.7 206 54.4
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 5.3e-55 220.3 181 58.6
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 2.0e-54 218.4 170 62.9
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 3.4e-54 217.6 174 63.8
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 2.9e-53 214.5 200 53.5
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 6.1e-51 206.8 181 56.9
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 5.7e-49 200.3 181 53.6
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 5.7e-49 200.3 181 53.6
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 5.7e-49 200.3 199 52.3
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 7.4e-49 199.9 206 48.1
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 2.2e-48 198.4 206 50.0
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 2.2e-48 198.4 157 63.1
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 4.8e-48 197.2 172 58.7
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 1.6e-46 192.2 206 46.6
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 5.0e-45 187.2 215 47.0
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 1.2e-43 182.6 215 46.0
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 2.6e-41 174.9 140 59.3
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 4.4e-41 174.1 198 47.5
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 7.5e-41 173.3 189 47.1
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 3.7e-40 171.0 135 63.7
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 1.2e-38 166.0 144 59.0
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 7.7e-38 163.3 137 56.2
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 1.3e-37 162.5 111 69.4
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 1.1e-36 159.5 122 64.8
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 3.2e-36 157.9 77 97.4
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 4.2e-36 157.5 143 57.3
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 1.2e-35 156.0 141 58.2
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.0e-34 151.4 113 63.7
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 9.8e-33 146.4 148 55.4
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 6.3e-32 143.7 109 59.6
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 1.4e-26 125.9 88 68.2
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 4.0e-26 124.4 116 56.0
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 5.7e-25 120.6 88 63.6
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 2.4e-23 115.2 87 62.1
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 1.3e-21 109.4 83 59.0
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 3.8e-21 107.8 86 55.8
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 1.5e-20 105.9 90 55.6
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 9.5e-20 103.2 183 35.5
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 8.0e-19 100.1 83 54.2
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 6.4e-16 90.5 87 49.4
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 7.8e-14 83.6 186 27.4
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 3.9e-13 81.3 160 34.4
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 2.3e-10 72.0 179 26.3
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 3.1e-10 71.6 163 26.4
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 4.0e-10 71.2 73 41.1
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 4.0e-10 71.2 179 25.1
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 5.8e-09 67.4 170 25.3
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 7.5e-09 67.0 158 24.7
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 7.5e-09 67.0 184 24.5
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 2.9e-08 65.1 138 23.9
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 3.7e-08 64.7 166 25.9
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 3.7e-08 64.7 166 25.9
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 3.7e-08 64.7 135 25.9
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 4.9e-08 64.3 166 25.9
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 6.4e-08 63.9 136 25.7
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 6.4e-08 63.9 189 27.0
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 6.4e-08 63.9 99 30.3
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 8.3e-08 63.5 99 30.3
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.1e-07 63.2 196 26.5
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 1.4e-07 62.8 135 25.9
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.4e-07 62.8 168 25.6
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 1.4e-07 62.8 144 24.3
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 1.9e-07 62.4 100 29.0
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 2.4e-07 62.0 179 25.7
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 2.4e-07 62.0 179 25.7
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 2.4e-07 62.0 184 25.0
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 3.2e-07 61.6 98 27.6
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 3.2e-07 61.6 54 53.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 5.4e-07 60.8 103 32.0
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 7.0e-07 60.5 150 28.7
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 7.0e-07 60.5 177 23.2
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.0e-07 60.5 100 29.0
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 7.0e-07 60.5 100 28.0
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 9.2e-07 60.1 85 32.9
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 9.2e-07 60.1 100 28.0
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 1.6e-06 59.3 157 24.8
Migut.I00272 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.6e-06 59.3 58 46.6
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 1.6e-06 59.3 149 27.5
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.7e-06 58.5 166 22.9
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 2.7e-06 58.5 138 23.9
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 2.7e-06 58.5 99 28.3
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 3.5e-06 58.2 203 23.2
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 3.5e-06 58.2 96 29.2
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 3.5e-06 58.2 165 26.7
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 4.6e-06 57.8 198 24.2
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 6.0e-06 57.4 143 28.0
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 7.8e-06 57.0 158 24.7
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 7.8e-06 57.0 197 22.8
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 7.8e-06 57.0 148 25.0
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 7.8e-06 57.0 201 20.9
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 7.8e-06 57.0 159 24.5
TWI09G0319 Tripterygium wilfordii HOM05D003039 ORTHO05D008410 7.8e-06 57.0 146 28.1


User provided reference genes

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