Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.3e-194 682.9 356 100.0
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 4.1e-108 395.6 354 61.9
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 5.3e-108 395.2 351 59.8
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 8.5e-106 387.9 353 58.9
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.5e-102 377.1 354 58.2
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.4e-102 375.6 354 58.5
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.0e-98 364.4 354 57.9
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 1.5e-97 360.5 353 57.5
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.9e-97 360.1 357 55.5
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 9.4e-97 357.8 346 59.0
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 1.6e-96 357.1 354 56.2
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.6e-96 357.1 360 57.2
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 6.1e-96 355.1 355 56.9
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 2.3e-95 353.2 356 57.0
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 6.7e-95 351.7 324 60.5
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 6.7e-95 351.7 363 56.5
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 2.6e-94 349.7 354 54.2
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 2.2e-93 346.7 329 56.5
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.8e-93 346.3 414 49.8
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 3.7e-93 345.9 375 52.3
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.8e-93 345.5 357 55.2
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 1.4e-92 344.0 356 53.9
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 1.8e-92 343.6 357 54.1
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 2.4e-92 343.2 359 53.5
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.4e-92 343.2 357 53.8
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 2.0e-91 340.1 359 53.5
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 2.7e-91 339.7 365 53.4
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 4.5e-91 339.0 360 53.1
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 5.9e-91 338.6 338 57.4
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 5.0e-90 335.5 359 52.9
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 5.0e-90 335.5 351 51.6
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 1.1e-89 334.3 361 52.4
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.1e-89 334.3 364 52.2
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 1.9e-89 333.6 365 50.4
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 4.2e-89 332.4 350 53.1
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 2.7e-88 329.7 356 54.2
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 3.6e-88 329.3 286 60.8
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.3e-87 326.6 358 50.0
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 5.2e-87 325.5 416 47.8
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 5.2e-87 325.5 350 49.7
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.8e-87 325.1 352 51.7
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 6.8e-87 325.1 358 50.8
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.2e-86 324.3 326 55.8
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.2e-86 324.3 358 49.7
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.2e-86 324.3 358 50.0
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.4e-86 322.4 351 51.6
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 9.8e-86 321.2 358 49.7
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 9.8e-86 321.2 360 50.6
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 1.3e-85 320.9 359 50.1
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.2e-85 320.1 358 50.0
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 2.2e-85 320.1 354 50.6
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 3.7e-85 319.3 283 59.4
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.7e-85 319.3 358 50.0
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 4.8e-85 318.9 281 59.4
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 6.3e-85 318.5 362 50.8
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 6.3e-85 318.5 356 50.8
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 1.1e-84 317.8 367 51.0
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 3.1e-84 316.2 358 51.4
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 5.4e-84 315.5 307 56.4
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 2.0e-83 313.5 290 57.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.0e-83 313.5 350 48.0
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 2.7e-83 313.2 369 49.9
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 3.5e-83 312.8 350 52.6
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.5e-83 312.4 344 52.6
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 2.5e-81 306.6 281 55.9
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 4.0e-79 299.3 343 49.9
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 8.8e-79 298.1 364 49.7
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 2.0e-75 287.0 279 54.8
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 2.0e-75 287.0 288 55.2
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 1.3e-74 284.3 368 48.4
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.3e-74 284.3 251 55.8
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 1.5e-73 280.8 279 54.1
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.5e-73 280.8 300 52.3
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 2.3e-71 273.5 437 42.8
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.0e-70 270.4 297 51.2
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.7e-69 267.3 362 45.9
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 3.7e-69 266.2 417 43.4
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 4.1e-68 262.7 334 46.7
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 5.4e-68 262.3 353 43.3
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 1.6e-67 260.8 243 62.6
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.0e-67 260.4 352 43.2
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 2.3e-66 256.9 257 56.4
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 8.6e-66 255.0 362 47.2
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 7.3e-65 251.9 279 51.3
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 8.0e-64 248.4 302 48.3
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 2.3e-63 246.9 350 42.0
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 2.3e-63 246.9 197 61.4
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 9.8e-62 241.5 258 54.3
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 1.7e-58 230.7 257 53.7
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 6.0e-51 205.7 539 32.1
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 8.6e-50 201.8 276 44.9
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 3.3e-49 199.9 344 36.9
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 5.6e-49 199.1 249 47.4
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.1e-47 194.9 343 39.1
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.8e-47 194.1 161 62.7
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 1.5e-41 174.5 179 52.5
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.6e-35 154.5 209 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 5.3e-31 139.4 304 30.6
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 5.3e-31 139.4 103 64.1
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 1.4e-28 131.3 162 45.7
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-24 117.9 362 28.2
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 7.1e-20 102.4 126 46.0
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 1.5e-17 94.7 116 44.8
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 2.5e-17 94.0 173 32.9
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 1.1e-15 88.6 235 35.7
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 1.1e-15 88.6 107 45.8
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 7.1e-12 75.9 234 26.9
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 2.5e-09 67.4 114 39.5
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 2.5e-09 67.4 59 50.8
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 9.6e-09 65.5 150 34.7
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.8e-08 63.2 45 62.2
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 2.6e-06 57.4 82 42.7
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 3.4e-06 57.0 37 64.9
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 7.6e-06 55.8 47 57.4
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 7.6e-06 55.8 76 39.5


User provided reference genes

Program Settings