Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 4.6e-89 331.3 175 100.0
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 7.7e-60 234.2 154 72.7
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 7.7e-60 234.2 164 68.9
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 4.7e-57 224.9 165 67.3
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 4.4e-55 218.4 155 68.4
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 5.7e-55 218.0 155 67.7
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 4.8e-54 214.9 163 65.6
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 5.4e-53 211.5 153 68.6
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 5.4e-53 211.5 155 67.7
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 3.5e-52 208.8 156 65.4
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 4.5e-52 208.4 149 65.8
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.3e-51 206.8 154 61.7
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 1.3e-51 206.8 166 60.8
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 3.8e-51 205.3 151 62.3
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 1.1e-50 203.8 159 59.1
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 7.2e-50 201.1 164 62.2
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 2.0e-47 193.0 149 64.4
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 5.7e-47 191.4 153 59.5
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 8.3e-46 187.6 151 57.0
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 1.4e-45 186.8 149 59.7
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 1.8e-45 186.4 151 62.3
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 2.4e-45 186.0 153 58.2
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 5.4e-45 184.9 153 56.9
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 9.1e-45 184.1 148 58.8
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 9.1e-45 184.1 154 55.2
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.6e-44 183.3 149 57.0
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 2.0e-44 183.0 148 60.1
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.7e-44 182.6 158 57.6
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 7.7e-44 181.0 150 58.7
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.3e-43 180.3 151 54.3
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 1.7e-43 179.9 149 56.4
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 2.9e-43 179.1 143 58.0
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 3.8e-43 178.7 149 54.4
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 5.0e-43 178.3 155 52.3
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 5.0e-43 178.3 171 49.7
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 6.6e-43 177.9 147 57.8
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 8.6e-43 177.6 149 54.4
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 1.1e-42 177.2 149 55.0
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.1e-42 177.2 149 54.4
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 2.5e-42 176.0 138 61.6
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 3.3e-42 175.6 143 55.2
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 4.2e-42 175.3 148 56.8
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 5.6e-42 174.9 149 53.7
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 5.6e-42 174.9 148 53.4
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 5.6e-42 174.9 146 56.2
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 7.2e-42 174.5 151 57.0
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 9.5e-42 174.1 151 54.3
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 9.5e-42 174.1 148 56.8
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 1.2e-41 173.7 146 57.5
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 2.1e-41 172.9 139 58.3
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 2.8e-41 172.6 145 54.5
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 3.6e-41 172.2 154 54.5
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 4.7e-41 171.8 148 54.7
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.0e-40 170.6 147 53.1
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 1.8e-40 169.9 154 53.9
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 1.8e-40 169.9 175 48.0
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.0e-40 168.7 157 55.4
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.8e-40 167.9 155 48.4
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 2.0e-39 166.4 148 56.1
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 7.5e-39 164.5 153 49.0
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 9.8e-39 164.1 161 49.1
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 9.8e-39 164.1 161 49.1
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 1.3e-38 163.7 149 53.0
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 2.2e-38 162.9 147 54.4
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 2.9e-38 162.5 171 48.5
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 2.9e-38 162.5 148 54.1
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 6.4e-38 161.4 159 48.4
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 8.3e-38 161.0 153 51.0
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 1.1e-37 160.6 159 48.4
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.4e-37 160.2 121 66.1
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 1.8e-37 159.8 149 51.7
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 1.8e-37 159.8 155 51.0
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 2.4e-37 159.5 157 51.6
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 2.4e-37 159.5 150 54.0
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 5.4e-37 158.3 159 49.1
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 9.2e-37 157.5 150 51.3
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 1.2e-36 157.1 147 53.1
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 5.9e-36 154.8 147 51.0
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 7.8e-36 154.5 149 50.3
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 3.9e-35 152.1 149 51.7
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 5.0e-35 151.8 130 60.8
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 6.6e-35 151.4 143 49.7
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 8.6e-35 151.0 149 49.7
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.5e-34 150.2 147 49.7
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 7.3e-34 147.9 142 54.2
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.0e-32 144.1 109 58.7
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 4.0e-32 142.1 157 45.2
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 5.2e-32 141.7 153 41.2
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 2.0e-31 139.8 108 57.4
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 4.4e-31 138.7 148 48.0
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 4.4e-31 138.7 148 48.0
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 9.8e-31 137.5 150 49.3
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 3.5e-28 129.0 147 51.0
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 1.0e-27 127.5 140 44.3
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 1.3e-27 127.1 119 51.3
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.3e-27 127.1 148 45.9
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.1e-26 124.0 124 50.0
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.1e-24 117.5 100 55.0
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.1e-24 117.5 140 47.1
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.8e-24 116.7 178 39.9
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 4.4e-23 112.1 111 48.6
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 9.8e-23 110.9 108 50.9
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 8.3e-22 107.8 88 62.5
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 1.2e-20 104.0 93 52.7
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 7.8e-20 101.3 97 52.6
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 1.3e-19 100.5 96 53.1
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 6.6e-19 98.2 153 40.5
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 8.6e-19 97.8 92 54.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.5e-18 96.3 136 33.8
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 7.3e-18 94.7 127 41.7
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 7.3e-18 94.7 83 55.4
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 6.2e-17 91.7 135 36.3
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 3.1e-16 89.4 79 54.4
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.2e-15 87.4 63 68.3
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 1.2e-15 87.4 142 33.1
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 1.5e-15 87.0 113 43.4
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 2.6e-15 86.3 117 36.8
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 7.6e-15 84.7 83 51.8
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 1.7e-14 83.6 108 44.4
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 2.9e-14 82.8 128 33.6
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.6e-12 77.0 58 56.9
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 3.1e-08 62.8 58 51.7
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 1.3e-06 57.4 121 31.4
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.7e-06 57.0 118 30.5
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 2.9e-06 56.2 121 28.9
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.9e-06 56.2 123 29.3
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 6.4e-06 55.1 121 29.8
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 8.4e-06 54.7 119 30.3
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 8.4e-06 54.7 119 30.3


User provided reference genes

Program Settings