Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24980 Coffea canephora HOM05D002629 ORTHO05D003221 2.2e-45 185.3 95 100.0
Lj7A544T39 Lonicera japonica HOM05D002629 ORTHO05D003221 1.4e-36 156.0 86 91.9
DCAR_029753 Daucus carota HOM05D002629 ORTHO05D003221 2.5e-36 155.2 86 91.9
Dinv44071 Davidia involucrata HOM05D002629 ORTHO05D003221 3.2e-36 154.8 86 89.5
Rhsim01G0138900 Rhododendron simsii HOM05D002629 ORTHO05D003221 3.2e-36 154.8 87 88.5
CSS0031736 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 5.5e-36 154.1 84 91.7
Manes.01G272500 Manihot esculenta HOM05D002629 ORTHO05D003221 9.4e-36 153.3 86 88.4
CiPaw.14G021300 Carya illinoinensis HOM05D002629 ORTHO05D003221 1.2e-35 152.9 86 89.5
QL04p030868 Quercus lobata HOM05D002629 ORTHO05D003221 1.2e-35 152.9 86 89.5
EL10Ac1g00777 Beta vulgaris HOM05D002629 ORTHO05D003221 3.6e-35 151.4 86 89.5
Dinv43631 Davidia involucrata HOM05D002629 ORTHO05D003221 4.7e-35 151.0 86 87.2
CANSAT81G0002 Cannabis sativa HOM05D002629 ORTHO05D003221 7.9e-35 150.2 86 89.5
FvH4_7g09880 Fragaria vesca HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
FAN03G1771 Fragaria x ananassa HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
FAN06G0846 Fragaria x ananassa HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
FAN10G1673 Fragaria x ananassa HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
FAN10G1881 Fragaria x ananassa HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
RcHm_v2.0_Chr1g0347431 Rosa chinensis HOM05D002629 ORTHO05D003221 1.4e-34 149.4 86 87.2
Actinidia12648 Actinidia chinensis HOM05D002629 ORTHO05D003221 1.8e-34 149.1 84 88.1
Cpa.g.sc101.20 Carica papaya HOM05D002629 ORTHO05D003221 1.8e-34 149.1 85 87.1
FAN06G2173 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.3e-34 148.7 86 87.2
Thecc.01G393100 Theobroma cacao HOM05D002629 ORTHO05D003221 2.3e-34 148.7 86 87.2
Ah.05g173240 Amaranthus hybridus HOM05D002629 ORTHO05D003221 3.0e-34 148.3 86 88.4
PSO063G0076 Papaver somniferum HOM05D002629 ORTHO05D003221 3.0e-34 148.3 88 85.2
PSO782G2159 Papaver somniferum HOM05D002629 ORTHO05D003221 3.0e-34 148.3 88 85.2
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 3.9e-34 147.9 86 87.2
CiPaw.13G027700 Carya illinoinensis HOM05D002629 ORTHO05D003221 5.2e-34 147.5 86 86.0
TAR375G0449 Trochodendron aralioides HOM05D002629 ORTHO05D003221 5.2e-34 147.5 86 87.2
TAR375G0872 Trochodendron aralioides HOM05D002629 ORTHO05D003221 5.2e-34 147.5 86 87.2
Actinidia33500 Actinidia chinensis HOM05D002629 ORTHO05D003221 6.7e-34 147.1 84 86.9
Sabra14G0033500 Salix brachista HOM05D002629 ORTHO05D003221 8.8e-34 146.7 84 89.3
Glyma.18G253400 Glycine max HOM05D002629 ORTHO05D003221 1.1e-33 146.4 89 82.0
Solyc01g090420.4 Solanum lycopersicum HOM05D002629 ORTHO05D003221 1.1e-33 146.4 86 86.0
Sopen01g036210 Solanum pennellii HOM05D002629 ORTHO05D003221 1.1e-33 146.4 86 86.0
TAR374G0587 Trochodendron aralioides HOM05D002629 ORTHO05D003221 1.1e-33 146.4 86 86.0
Duzib138G1927 Durio zibethinus HOM05D002629 ORTHO05D003221 2.0e-33 145.6 85 85.9
ECA240G2280 Erigeron canadensis HOM05D002629 ORTHO05D003221 2.0e-33 145.6 86 86.0
Sabra02G0106100 Salix brachista HOM05D002629 ORTHO05D003221 2.0e-33 145.6 86 86.0
Nitab4.5_0003553g0060 Nicotiana tabacum HOM05D002629 ORTHO05D003221 2.6e-33 145.2 86 84.9
arahy.Tifrunner.gnm1.ann1.NJU9W5 Arachis hypogaea HOM05D002629 ORTHO05D003221 3.3e-33 144.8 84 86.9
Ca_04037_v3 Cicer arietinum L. HOM05D002629 ORTHO05D003221 3.3e-33 144.8 84 85.7
CAN.G362.8 Capsicum annuum HOM05D002629 ORTHO05D003221 5.7e-33 144.1 86 84.9
COL.COLO4_12423 Corchorus olitorius HOM05D002629 ORTHO05D003221 5.7e-33 144.1 84 86.9
Lsat_1_v5_gn_3_131781 Lactuca sativa HOM05D002629 ORTHO05D003221 5.7e-33 144.1 84 88.1
arahy.Tifrunner.gnm1.ann1.Z4V8RQ Arachis hypogaea HOM05D002629 ORTHO05D003221 7.4e-33 143.7 84 85.7
Potri.014G046000 Populus trichocarpa HOM05D002629 ORTHO05D003221 7.4e-33 143.7 86 84.9
TPR.G12223 Trifolium pratense HOM05D002629 ORTHO05D003221 7.4e-33 143.7 84 84.5
Sc02g0003040 Simmondsia chinensis HOM05D002629 ORTHO05D003221 9.7e-33 143.3 84 85.7
GSVIVG01018254001 Vitis vinifera HOM05D002629 ORTHO05D003221 9.7e-33 143.3 86 82.6
MELO3C005980.2 Cucumis melo HOM05D002629 ORTHO05D003221 1.3e-32 142.9 86 83.7
CsaV3_3G007580 Cucumis sativus L. HOM05D002629 ORTHO05D003221 1.3e-32 142.9 86 83.7
HanXRQChr13g0423391 Helianthus annuus HOM05D002629 ORTHO05D003221 1.3e-32 142.9 86 84.9
Nitab4.5_0003696g0020 Nicotiana tabacum HOM05D002629 ORTHO05D003221 1.3e-32 142.9 86 83.7
Psat3g195880 Pisum sativum HOM05D002629 ORTHO05D003221 1.3e-32 142.9 84 84.5
Potri.001G079300 Populus trichocarpa HOM05D002629 ORTHO05D003221 1.3e-32 142.9 84 82.1
Lj1g0021466 Lotus japonicus HOM05D002629 ORTHO05D003221 1.7e-32 142.5 84 84.5
Lalb_Chr19g0126581 Lupinus albus HOM05D002629 ORTHO05D003221 1.7e-32 142.5 84 85.7
Medtr7g007780 Medicago truncatula HOM05D002629 ORTHO05D003221 1.7e-32 142.5 84 84.5
Sed0010164 Sechium edule HOM05D002629 ORTHO05D003221 1.7e-32 142.5 86 83.7
Glyma.09G242200 Glycine max HOM05D002629 ORTHO05D003221 2.2e-32 142.1 84 84.5
Lalb_Chr03g0040291 Lupinus albus HOM05D002629 ORTHO05D003221 2.2e-32 142.1 84 84.5
Atru.chr5.154 Acer truncatum HOM05D002629 ORTHO05D003221 2.8e-32 141.7 81 87.7
Sabra01G0056800 Salix brachista HOM05D002629 ORTHO05D003221 2.8e-32 141.7 84 82.1
Sp4g26970 Schrenkiella parvula HOM05D002629 ORTHO05D003221 2.8e-32 141.7 86 81.4
PGR004G2363 Punica granatum HOM05D002629 ORTHO05D003221 3.7e-32 141.4 86 84.9
Ciclev10018755m.g Citrus clementina HOM05D002629 ORTHO05D003221 4.8e-32 141.0 81 87.7
Gorai.004G071500 Gossypium raimondii HOM05D002629 ORTHO05D003221 4.8e-32 141.0 86 82.6
Potri.002G137100 Populus trichocarpa HOM05D002629 ORTHO05D003221 4.8e-32 141.0 86 84.9
Gohir.D08G068300 Gossypium hirsutum HOM05D002629 ORTHO05D003221 6.3e-32 140.6 86 82.6
Sed0006090 Sechium edule HOM05D002629 ORTHO05D003221 6.3e-32 140.6 86 82.6
VMungo1383G0712 Vigna mungo HOM05D002629 ORTHO05D003221 6.3e-32 140.6 84 83.3
Eucgr.D01517 Eucalyptus grandis HOM05D002629 ORTHO05D003221 8.2e-32 140.2 86 83.7
SpUN0080_0050 Schrenkiella parvula HOM05D002629 ORTHO05D003221 8.2e-32 140.2 86 80.2
MSTRG.20699 Avicennia marina HOM05D002629 ORTHO05D003221 1.1e-31 139.8 84 86.9
Thhalv10001300m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 1.1e-31 139.8 86 80.2
Os10g0563200 Oryza sativa ssp. japonica HOM05D002629 ORTHO05D003221 1.1e-31 139.8 86 81.4
Phvul.008G045600 Phaseolus vulgaris HOM05D002629 ORTHO05D003221 1.1e-31 139.8 81 85.2
Gohir.A08G059100 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.4e-31 139.4 86 81.4
Oeu063227.1 Olea europaea HOM05D002629 ORTHO05D003221 1.4e-31 139.4 83 85.5
Aa31LG1G26430 Aethionema arabicum HOM05D002629 ORTHO05D003221 1.8e-31 139.0 86 79.1
Atru.chr1.908 Acer truncatum HOM05D002629 ORTHO05D003221 4.1e-31 137.9 86 79.1
Thhalv10005776m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 5.3e-31 137.5 86 79.1
CARHR140140 Cardamine hirsuta HOM05D002629 ORTHO05D003221 9.1e-31 136.7 86 79.1
BcaB02g08173 Brassica carinata HOM05D002629 ORTHO05D003221 1.2e-30 136.3 86 77.9
Peaxi162Scf00030g00516 Petunia axillaris HOM05D002629 ORTHO05D003221 1.2e-30 136.3 86 80.2
ClCG05G000420 Citrullus lanatus HOM05D002629 ORTHO05D003221 2.0e-30 135.6 93 77.4
MSTRG.4927 Avicennia marina HOM05D002629 ORTHO05D003221 2.6e-30 135.2 84 82.1
GSVIVG01013967001 Vitis vinifera HOM05D002629 ORTHO05D003221 2.6e-30 135.2 86 80.2
BcaB06g29404 Brassica carinata HOM05D002629 ORTHO05D003221 3.5e-30 134.8 89 77.5
THA.LOC104817192 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 3.5e-30 134.8 86 77.9
BcaC02g07120 Brassica carinata HOM05D002629 ORTHO05D003221 4.5e-30 134.4 86 74.4
C04p71290 Brassica napus HOM05D002629 ORTHO05D003221 4.5e-30 134.4 86 74.4
BolC4t28633H Brassica oleracea HOM05D002629 ORTHO05D003221 4.5e-30 134.4 86 74.4
CSS0010116 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 4.5e-30 134.4 81 81.5
AL4G43990 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 5.9e-30 134.0 86 76.7
HPP92_014909 Vanilla planifolia HOM05D002629 ORTHO05D003221 7.7e-30 133.7 84 78.6
AT2G44900 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 1.0e-29 133.3 86 76.7
Carub.0005s2710 Capsella rubella HOM05D002629 ORTHO05D003221 1.0e-29 133.3 86 76.7
Migut.N01752 Erythranthe guttata HOM05D002629 ORTHO05D003221 1.0e-29 133.3 83 80.7
SEGI_03510 Sequoiadendron giganteum HOM05D002629 ORTHO05D003221 1.3e-29 132.9 84 81.0
Thecc.03G149100 Theobroma cacao HOM05D002629 ORTHO05D003221 1.3e-29 132.9 81 81.5
Zm00001eb023660 Zea mays HOM05D002629 ORTHO05D003221 1.3e-29 132.9 82 82.9
BcaC02g10150 Brassica carinata HOM05D002629 ORTHO05D003221 2.2e-29 132.1 81 80.2
A04p01670 Brassica napus HOM05D002629 ORTHO05D003221 2.2e-29 132.1 81 80.2
C04p32220 Brassica napus HOM05D002629 ORTHO05D003221 2.2e-29 132.1 81 80.2
BolC4t24773H Brassica oleracea HOM05D002629 ORTHO05D003221 2.2e-29 132.1 81 80.2
BraA04t15891Z Brassica rapa HOM05D002629 ORTHO05D003221 2.2e-29 132.1 81 80.2
TWI14G0886 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 2.2e-29 132.1 86 74.4
TWI14G1152 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 2.2e-29 132.1 86 74.4
A04p33530 Brassica napus HOM05D002629 ORTHO05D003221 2.9e-29 131.7 86 73.3
BraA04t18815Z Brassica rapa HOM05D002629 ORTHO05D003221 2.9e-29 131.7 86 73.3
MD07G1104300 Malus domestica HOM05D002629 ORTHO05D003221 2.9e-29 131.7 86 79.1
Manes.14G038600 Manihot esculenta HOM05D002629 ORTHO05D003221 3.8e-29 131.3 84 75.0
unitig_26.g8869 Utricularia gibba HOM05D002629 ORTHO05D003221 3.8e-29 131.3 86 77.9
ATR0057G096 Amborella trichopoda HOM05D002629 ORTHO05D003221 5.0e-29 131.0 88 77.3
BcaB01g03300 Brassica carinata HOM05D002629 ORTHO05D003221 5.0e-29 131.0 86 75.6
Aqoxy3G02758 Aquilegia oxysepala HOM05D002629 ORTHO05D003221 8.5e-29 130.2 86 73.3
MD02G1216100 Malus domestica HOM05D002629 ORTHO05D003221 1.1e-28 129.8 86 77.9
Carub.0004s2749 Capsella rubella HOM05D002629 ORTHO05D003221 1.5e-28 129.4 86 74.4
THA.LOC104802491 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 1.5e-28 129.4 88 76.1
Pp3c4_17860 Physcomitrium patens HOM05D002629 ORTHO05D003221 2.5e-28 128.6 84 75.0
TWI59G0032 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 2.5e-28 128.6 86 73.3
TWI59G0861 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 2.5e-28 128.6 86 73.3
AL5G42590 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 4.2e-28 127.9 86 74.4
Aqoxy7G00845 Aquilegia oxysepala HOM05D002629 ORTHO05D003221 7.2e-28 127.1 81 79.0
Duzib068G1177 Durio zibethinus HOM05D002629 ORTHO05D003221 1.2e-27 126.3 81 77.8
SMO143G0319 Selaginella moellendorffii HOM05D002629 ORTHO05D003221 1.6e-27 125.9 86 73.3
TPR.G32620 Trifolium pratense HOM05D002629 ORTHO05D003221 1.6e-27 125.9 84 73.8
CDE04G1047 Ceratophyllum demersum HOM05D002629 ORTHO05D003221 2.7e-27 125.2 87 73.6
SalBow5G1432 Salvia bowleyana HOM05D002629 ORTHO05D003221 6.1e-27 124.0 79 84.8
Actinidia12151 Actinidia chinensis HOM05D002629 ORTHO05D003221 1.0e-26 123.2 82 75.6
Mapoly0150s0009 Marchantia polymorpha HOM05D002629 ORTHO05D003221 1.4e-26 122.9 79 77.2
Gohir.A11G039600 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.8e-26 122.5 81 75.3
Pp3c12_9730 Physcomitrium patens HOM05D002629 ORTHO05D003221 1.8e-26 122.5 84 71.4
AT3G60350 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 4.0e-26 121.3 84 73.8
Oeu011234.1 Olea europaea HOM05D002629 ORTHO05D003221 6.7e-26 120.6 70 87.1
Gohir.D11G042900 Gossypium hirsutum HOM05D002629 ORTHO05D003221 8.8e-26 120.2 81 74.1
vmacro13487 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 2.0e-25 119.0 82 72.0
AagrBONN_evm.TU.Sc2ySwM_117.2598 Anthoceros agrestis HOM05D002629 ORTHO05D003221 2.6e-25 118.6 79 75.9
CARHR170670 Cardamine hirsuta HOM05D002629 ORTHO05D003221 3.3e-25 118.2 86 70.9
Gohir.A08G029600 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.3e-25 118.2 87 71.3
Gohir.D08G040400 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.3e-25 118.2 87 71.3
Gorai.004G039300 Gossypium raimondii HOM05D002629 ORTHO05D003221 3.3e-25 118.2 87 71.3
BcaC07g40426 Brassica carinata HOM05D002629 ORTHO05D003221 5.7e-25 117.5 82 72.0
vmacro13490 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 5.7e-25 117.5 79 73.4
BcaNung06045 Brassica carinata HOM05D002629 ORTHO05D003221 1.3e-24 116.3 86 69.8
BolC8t51129H Brassica oleracea HOM05D002629 ORTHO05D003221 1.3e-24 116.3 86 69.8
Gorai.007G046200 Gossypium raimondii HOM05D002629 ORTHO05D003221 1.7e-24 115.9 87 70.1
Rhsim07G0035100 Rhododendron simsii HOM05D002629 ORTHO05D003221 2.2e-24 115.5 75 78.7
SEGI_09430 Sequoiadendron giganteum HOM05D002629 ORTHO05D003221 4.8e-24 114.4 70 82.9
Oeu031413.1 Olea europaea HOM05D002629 ORTHO05D003221 6.3e-24 114.0 76 77.6
Actinidia40386 Actinidia chinensis HOM05D002629 ORTHO05D003221 8.2e-24 113.6 82 72.0
A09p52630 Brassica napus HOM05D002629 ORTHO05D003221 1.8e-23 112.5 86 68.6
BraA09t40692Z Brassica rapa HOM05D002629 ORTHO05D003221 1.8e-23 112.5 86 68.6
HanXRQChr03g0093221 Helianthus annuus HOM05D002629 ORTHO05D003221 2.4e-23 112.1 86 67.4
SGA_v2.0_scaffold153G36913 Striga asiatica HOM05D002629 ORTHO05D003221 2.4e-23 112.1 94 66.0
Gohir.A12G096550 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.1e-23 111.7 88 65.9
C08p35360 Brassica napus HOM05D002629 ORTHO05D003221 1.6e-22 109.4 86 66.3
Gohir.D12G099366 Gossypium hirsutum HOM05D002629 ORTHO05D003221 2.0e-22 109.0 88 63.6
Gorai.008G108200 Gossypium raimondii HOM05D002629 ORTHO05D003221 1.3e-21 106.3 88 61.4
BcaC07g40428 Brassica carinata HOM05D002629 ORTHO05D003221 2.9e-21 105.1 78 71.8
BcaC07g40430 Brassica carinata HOM05D002629 ORTHO05D003221 2.9e-21 105.1 78 71.8
Gohir.A03G059800 Gossypium hirsutum HOM05D002629 ORTHO05D003221 6.5e-21 104.0 81 67.9
vmacro21053 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 1.9e-20 102.4 55 90.9
DCAR_025070 Daucus carota HOM05D002629 ORTHO05D003221 9.4e-20 100.1 83 62.7
CDE12G0117 Ceratophyllum demersum HOM05D002629 ORTHO05D003221 8.0e-19 97.1 64 73.4
SGA_v2.0_scaffold52G19217 Striga asiatica HOM05D002629 ORTHO05D003221 9.8e-17 90.1 55 80.0
FAN01G1804 Fragaria x ananassa HOM05D002629 ORTHO05D003221 1.2e-14 83.2 60 71.7
BolC3t15325H Brassica oleracea HOM05D002629 ORTHO05D003221 5.9e-14 80.9 58 65.5
C03p29750 Brassica napus HOM05D002629 ORTHO05D003221 2.9e-13 78.6 58 63.8
BcaC07g42772 Brassica carinata HOM05D002629 ORTHO05D003221 4.4e-09 64.7 88 47.7
vmacro18977 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 7.0e-07 57.4 42 64.3
QL04p030794 Quercus lobata HOM05D002629 ORTHO05D003221 4.5e-06 54.7 28 92.9
AUR62013732 Chenopodium quinoa HOM05D002629 ORTHO05D003221 7.8e-06 53.9 29 86.2


User provided reference genes

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