Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 7.1e-130 467.2 230 100.0
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 3.8e-83 312.0 203 75.9
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 5.0e-83 311.6 204 75.5
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 2.1e-81 306.2 204 75.0
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 2.7e-81 305.8 204 76.0
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 8.0e-81 304.3 225 68.4
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.8e-80 303.1 214 71.5
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.8e-80 303.1 211 73.9
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 8.8e-80 300.8 221 70.1
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.0e-79 299.7 190 78.4
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 7.5e-79 297.7 211 71.6
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.3e-78 297.0 189 78.3
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.3e-78 297.0 211 71.1
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 2.2e-78 296.2 189 77.8
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.8e-78 295.8 224 69.2
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.8e-78 295.8 206 70.9
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 2.8e-78 295.8 212 69.3
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 4.8e-78 295.0 228 65.4
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 4.8e-78 295.0 220 68.6
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 4.8e-78 295.0 214 69.6
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.4e-77 293.5 210 72.9
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.4e-77 292.7 200 72.5
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.1e-77 292.0 204 73.0
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 5.3e-77 291.6 187 72.7
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 5.3e-77 291.6 211 68.2
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 7.0e-77 291.2 215 67.4
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 7.0e-77 291.2 215 67.4
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 7.0e-77 291.2 196 71.9
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 7.0e-77 291.2 188 75.0
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 7.0e-77 291.2 211 68.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 9.1e-77 290.8 206 69.4
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.2e-76 290.4 212 67.5
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 2.0e-76 289.7 201 71.6
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.5e-76 288.9 202 71.3
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 3.5e-76 288.9 215 66.5
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 4.5e-76 288.5 200 71.5
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 5.9e-76 288.1 178 77.0
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 7.7e-76 287.7 219 67.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.3e-75 287.0 222 66.7
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.7e-75 286.6 219 68.5
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.7e-75 286.6 211 65.9
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.2e-75 286.2 238 66.4
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.9e-75 285.8 226 65.5
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 5.0e-75 285.0 201 70.6
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.5e-75 284.3 192 71.9
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.5e-74 283.5 192 72.4
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.5e-74 283.5 192 72.4
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.9e-74 283.1 201 70.1
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 3.2e-74 282.3 184 75.0
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.2e-74 282.0 184 75.5
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 7.2e-74 281.2 195 70.8
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 9.4e-74 280.8 190 73.2
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 9.4e-74 280.8 189 73.0
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.2e-73 280.4 208 66.8
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.1e-73 279.6 229 64.2
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 3.6e-73 278.9 212 67.0
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 3.6e-73 278.9 180 76.1
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 8.0e-73 277.7 177 75.1
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 8.0e-73 277.7 179 71.5
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.4e-72 276.9 196 69.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 7.5e-71 271.2 175 78.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.3e-70 270.4 200 70.5
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 6.3e-70 268.1 205 66.3
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.1e-69 267.3 175 71.4
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.8e-69 266.5 174 70.1
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 4.1e-69 265.4 225 63.6
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 9.1e-69 264.2 175 69.7
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 9.1e-69 264.2 175 69.7
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.2e-68 263.8 205 65.4
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.6e-68 263.5 202 64.9
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 2.0e-68 263.1 175 69.7
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.7e-68 262.7 175 69.7
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.7e-68 262.7 175 69.7
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 4.5e-68 261.9 175 69.7
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.9e-67 259.2 178 67.4
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 5.0e-67 258.5 181 70.7
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.6e-65 252.3 144 79.9
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 6.1e-65 251.5 203 61.6
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 6.8e-64 248.1 226 56.6
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 4.1e-61 238.8 141 79.4
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 7.0e-61 238.0 161 75.2
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 2.0e-60 236.5 141 78.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 4.5e-60 235.3 189 65.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.3e-59 233.0 173 63.0
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.1e-58 230.7 172 68.6
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 3.3e-58 229.2 213 54.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.8e-57 226.1 190 60.5
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 4.7e-57 225.3 177 66.1
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 2.3e-56 223.0 180 62.8
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 5.2e-56 221.9 167 61.7
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.4e-55 219.2 158 69.6
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 9.8e-55 217.6 173 58.4
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 2.2e-54 216.5 164 64.0
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.9e-54 215.3 173 57.8
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.0e-51 207.6 170 64.7
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.1e-48 197.6 149 69.8
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 1.1e-45 187.6 144 65.3
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.4e-37 159.8 120 65.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 3.5e-36 156.0 123 59.3
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.5e-36 156.0 183 45.4
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 3.9e-35 152.5 218 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 5.1e-35 152.1 141 55.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 5.1e-35 152.1 205 42.9
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 4.0e-32 142.5 85 71.8
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.2e-31 141.0 85 70.6
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.3e-30 137.5 232 37.1
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 8.7e-27 124.8 170 40.0
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 2.4e-24 116.7 92 65.2
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 6.9e-24 115.2 176 38.6
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.7e-22 110.5 55 83.6
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.1e-21 107.8 98 60.2
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.1e-17 93.6 82 56.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.6e-15 85.1 121 45.5
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 9.3e-13 78.2 75 57.3
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.3e-11 74.3 75 50.7
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.1e-10 71.2 77 50.6
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 5.6e-10 68.9 34 88.2
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 1.6e-09 67.4 82 48.8
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 6.9e-08 62.0 205 24.9
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.5e-07 60.8 33 78.8
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 2.6e-07 60.1 170 25.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 1.0e-06 58.2 148 29.1
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.0e-06 58.2 142 26.8
PRCOL_00002581 Prasinoderma coloniale HOM05D005663 ORTHO05D002254 2.9e-06 56.6 195 26.2
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.9e-06 55.8 148 28.4
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 4.9e-06 55.8 244 24.2
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 4.9e-06 55.8 201 22.9


User provided reference genes

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