Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 3.7e-91 338.2 169 100.0
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.0e-72 276.9 167 81.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.3e-72 276.6 167 80.2
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 5.0e-72 274.6 169 79.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.1e-71 273.5 169 78.1
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.9e-71 272.7 162 82.7
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.2e-71 271.9 169 78.7
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.2e-71 271.6 169 78.7
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 3.6e-70 268.5 169 75.7
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 6.1e-70 267.7 166 80.1
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 6.1e-70 267.7 163 79.1
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 5.1e-69 264.6 169 75.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 8.8e-69 263.8 169 74.0
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.6e-68 262.3 169 75.1
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.3e-68 261.9 169 75.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 4.4e-68 261.5 166 75.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.4e-68 261.5 163 75.5
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.7e-68 261.2 164 76.8
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.3e-67 260.0 166 74.7
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 74.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 77.2
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.4e-66 256.5 168 75.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.8e-66 256.1 164 77.4
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.4e-66 255.8 164 77.4
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.1e-66 255.4 164 75.0
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.3e-66 254.6 164 76.8
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 74.1
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 74.7
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 75.9
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.0e-65 252.7 166 74.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.5e-65 251.9 165 75.8
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.7e-65 250.8 164 76.8
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 7.7e-65 250.8 166 73.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.0e-64 250.4 153 80.4
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.0e-64 250.4 168 75.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.7e-64 249.6 164 76.2
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.7e-64 249.6 167 73.1
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.9e-64 248.8 168 72.6
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.8e-64 248.4 192 67.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 5.0e-64 248.1 166 72.9
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 5.0e-64 248.1 166 73.5
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 8.5e-64 247.3 160 73.1
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.5e-64 247.3 166 72.9
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.5e-63 245.7 164 73.8
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-63 245.7 168 73.8
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 72.9
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.2e-63 245.0 168 73.2
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.2e-62 243.4 166 71.7
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.7e-62 242.3 166 71.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.7e-62 242.3 166 71.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.7e-62 242.3 166 71.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 2.7e-62 242.3 163 73.6
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-62 241.5 166 71.7
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 4.7e-62 241.5 162 72.8
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 6.1e-62 241.1 166 72.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.1e-62 241.1 166 70.5
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.8e-61 239.6 164 72.0
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 71.7
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 71.7
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 71.7
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 71.7
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 5.2e-61 238.0 203 64.5
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.7e-61 237.7 166 71.1
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 8.8e-61 237.3 166 70.5
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.1e-60 236.9 166 69.9
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 69.3
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 69.9
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.0e-60 236.1 163 71.2
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.6e-60 235.7 159 73.0
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 7.4e-60 234.2 166 69.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.7
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 4.8e-59 231.5 164 68.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-58 229.2 154 73.4
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.1e-58 228.8 167 67.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 7.0e-58 227.6 186 63.4
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.2e-56 222.6 162 68.5
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.9e-56 222.2 149 73.2
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 6.5e-56 221.1 137 79.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.5e-55 219.2 190 60.5
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.2e-55 218.4 166 63.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.5e-55 218.0 166 61.4
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.2e-52 210.3 139 73.4
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.7e-51 206.5 137 72.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 4.8e-51 204.9 158 62.0
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.3e-51 204.1 190 56.8
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.1e-50 203.8 158 61.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.4e-50 203.4 161 61.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.8e-50 203.0 159 61.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.4e-50 202.6 166 62.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 9.1e-50 200.7 158 60.8
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.0e-48 197.2 174 60.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.8e-48 195.3 136 66.9
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 5.0e-48 194.9 152 59.2
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 8.5e-48 194.1 122 77.0
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.2e-47 191.8 143 67.1
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 9.4e-47 190.7 156 55.1
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 9.4e-47 190.7 118 75.4
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.2e-46 190.3 117 78.6
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.1e-46 189.5 153 56.9
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 2.1e-46 189.5 140 63.6
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.7e-46 189.1 153 56.9
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.6e-46 188.7 153 56.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.6e-46 188.7 153 56.2
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 6.1e-46 188.0 116 77.6
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-45 186.8 149 57.7
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 162 53.7
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.4e-45 186.8 128 71.1
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-45 186.4 162 54.3
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.0e-45 185.3 126 68.3
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 8.8e-45 184.1 136 63.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.5e-44 183.3 153 55.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-44 183.3 162 53.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-43 180.3 162 52.5
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-42 176.8 159 52.2
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.7e-41 172.6 140 56.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 3.5e-41 172.2 116 70.7
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 3.5e-41 172.2 135 63.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.0e-40 170.6 116 70.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.0e-40 170.6 116 73.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.8e-34 149.8 116 61.2
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.8e-33 144.4 154 50.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.7e-32 143.3 163 46.6
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.3e-32 142.9 160 45.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.6e-32 141.4 103 63.1
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.9e-31 139.8 163 44.2
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.3e-31 138.7 88 76.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.8e-30 136.0 140 55.7
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 6.1e-30 134.8 129 51.2
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.0e-29 134.0 122 54.9
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.1e-29 132.5 112 60.7
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.2e-27 126.3 139 45.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 9.2e-26 120.9 113 50.4
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-25 120.2 74 75.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.0e-24 115.2 163 45.4
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.5e-23 113.6 84 71.4
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.6e-22 110.2 151 39.7
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-22 110.2 92 56.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 3.6e-22 109.0 70 74.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.7e-19 100.1 83 54.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.7e-19 100.1 83 54.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.7e-19 100.1 83 54.2
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.9e-18 96.7 71 60.6
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.4e-18 95.1 94 48.9
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 5.4e-18 95.1 163 40.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 7.3e-15 84.7 75 58.7
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.6e-14 83.6 52 69.2
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.1e-14 83.2 59 69.5
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.2e-14 81.6 69 65.2
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 3.1e-13 79.3 54 72.2
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 50 74.0
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.7e-11 73.6 58 58.6
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.2e-11 73.2 54 68.5
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 4.9e-11 72.0 49 73.5
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.1e-10 70.9 48 72.9
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 8.6e-08 61.2 43 74.4


User provided reference genes

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